Abstract
The objective of this study was to compare the standard multi-trait model and five reduced-rank models fitted to the first principal components and genetic parameter estimates in order to determine the most appropriate method to model the covariance structure of reproductive and productive traits in Brazilian Holstein cows. Individual records of the following traits from 5217 cows were analyzed: 305-day milk yield (MY305), peak yield, milk yield per day of calving interval, days from calving to first estrus, days from calving to last service (CLS), calving interval (CI), and gestation length. Schwarz’s Bayesian information criterion was used to compare the different models. The results indicated that four principal components were necessary to model the genetic (co)variance structure, reducing the number of parameters to be estimated. Analysis of genetic and phenotypic correlations showed that milk production–related traits were strongly correlated with each other (ranging from 0.74 to 0.99), while the correlation of these traits with the reproductive traits was weak (ranging from − 0.14 to 0.27). Heritability estimates for the traits ranged from 0.03 to 0.18. The reproductive traits CLS and CI and the production trait MY305 should be included as selection criteria in dairy cattle breeding programs because they are correlated with the first two principal components, retaining 91% of the genetic variability of the data.
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Agudelo-Gomez, D. A., Savegnago, R. P., Buzanskas, M. E., Ferraudo, A. S., Munari, D. P., Ceron-Munoz, D. P., 2015. Genetic principal components for reproductive and productive traits in dual-purpose buffaloes in Colombia. Journal of Animal Science, 93, 3801-3809.
Albarran-Portillo, B., Pollott, G. E., 2008. Genetic parameters derived from using a biological model of lactation on records of commercial dairy cows. Journal of Animal Science, 91, 3639–3648.
Albarrán-Portillo, B., Pollott, G. E. 2013. The relationship between fertility and lactation characteristics in Holstein cows on United Kingdom commercial dairy farms. Journal of Dairy Science, 96, 635–646.
Bauman, D. E., Currie, W. B., 1980. Partitioning of nutrients during pregnancy and lactation—A review of mechanisms involving homeostasis and homeorhesis. Journal of Dairy Science, 63, 1514–1529.
Bello, N. M., Stevenson, J. S., Tempelman, R. J., 2012. Invited review: milk production and reproductive performance: modern interdisciplinary insights into an enduring axiom. Journal of Dairy Science, 95, 5461–5475.
Bignardi, A. B., El Faro, L., Rosa, G. J. M., Cardoso, V. L., Machado, P. F., Albuquerque, L. G., 2012. Short communication: Principal components and factor analytic models for test-day milk yield in Brazilian Holstein cattle. Journal of Dairy Science, 95, 2157-2164.
Bignardi, A. B., Santana, M. L., Eler, J. P., Ferraz, J. B. S., 2014. Models for genetic evaluation of growth of Brazilian Bonsmara cattle. Livestock Science, 162, 50-58.
Bignardi, A. B., El Faro, L., Pereira, R. J., Ayres, D. R., Machado, P. F., Albuquerque, L. G., Santana, M. L., 2015. Reaction norm model to describe environmental sensitivity across first lactation in dairy cattle under tropical conditions. Tropical Animal Health and Production, 47, 1405–1410.
Boligon, A. A., Silveira, F. A., Silveira, D. D., Dionello, N. J. L., Santana, M. L., Bignardi, A. B., Souza, F. R. P., 2015. Reduced-rank models of growth and reproductive traits in Nelore cattle. Theriogenology, 83, 1338-1343.
Eghbalsaied, S., 2011. Estimation of genetic parameters for 13 female fertility indices in Holstein dairy cows. Tropical Animal Health and Production, 43, 811-816.
Fernandes, P. B., Marques, K.O., de Araujo, F. R., de Oliveira, D. P., Hurtado-Lugo, N.A., Aspilcueta-Borquis, R. R., Tonhati, H., 2016. Genetic-quantitative study of the first-service pregnancy probability of Murrah heifers. Reproduction in Domestic Animals, 51, 428-434.
Irano, N., Bignardi, A. B., El Faro, L., Santana, M. L., Cardoso, V. L., Albuquerque, L. G., 2014. Genetic association between milk yield, stayability, and mastitis in Holstein cows under tropical conditions. Tropical Animal Health and Production, 46, 529–535.
Irano, N., Bignardi, A. B., Baldi, F., Santana, M. L., Teixeira, I., Tonhati, H. Albuquerque, L. G., 2015. Multivariate analysis of test-day and total milk yield in goats. Genetics and Molecular Research, 14, 13719-13727.
Jamrozik, J., Fatehi, J., Kistemaker, G. J., Schaeffer, L. R., 2005. Estimates of genetic parameters for Canadian Holstein female reproduction traits. Journal of Dairy Science, 88, 2199–2208.
Karacaoren, B., Kadarmideen, H. N., 2008. Principal component and clustering analysis of functional traits in Swiss dairy cattle. Turkish Journal of Veterinary and Animal Science, 32, 163-171.
Kirkpatrick, M., Meyer, K., 2004. Direct estimation of genetic principal components. Simplified analysis of complex phenotypes. Genetics. 168, 2295-2306.
Köppen, W., Geiger, R., 1936. Handbuch der Klimatologie. Berlin, Gebr. Borntrager.
Mello, R. R. C., Sinedino, L. D., Ferreira, J.E., Sousa, S. L. G., Mello, M. R. B., 2020. Principal component and cluster analyses of production and fertility traits in Red Sindhi dairy cattle breed in Brazil. Tropical Animal Health and Production, 52, 273–281.
Meyer, K., 2007a. WOMBAT: a tool for mixed model analyses in quantitative genetics by restricted maximum likelihood (REML). Journal of Zhejiang University Science B, 8, 815-821.
Meyer, K., 2007b. Multivariate analyses of carcass traits for Angus cattle fitting reduced rank and factor analytic models. Journal of Animal Breeding and Genetics, 124, 50-64.
Meyer, K., 2008. Parameter expansion for estimation of reduced rank covariance matrices. Genetic Selection Evolution, 40, 3–24.
Meyer, K., Kirkpatrick, M., 2005. Restricted maximum likelihood estimation of genetic principal components and smoothed covariance matrices. Genetics Selection Evolution, 37, 1-30.
Nascimento, G. B., Savegnago, R. P., Chud, T. C. S., Ledur, M. C., Figueiredo, E. A. P., Munari, D. P., 2014. Genetic parameter estimates and principal component analysis on performance and carcass traits of a terminal pig sire line. Acta Agriculturæ Scandinavica Section A – Animal Science, 64, 137-144.
Nobre, P. R. C., Misztal, I., Tsuruta, S., Bertrand, J. K., Silva, L. O. C., Lopes, P. S., 2003. Genetic evaluation of growth in Nellore cattle by multiple-trait and random regression models. Journal of Animal Science, 81,927–932.
Pereira, R. J., Ayres, D. R., El Faro, L., Verneque, R. S., Vercesi, A. E., Albuquerque, L. G., 2013. Comparison of factor-analytic and reduced rank models for test-day milk yield in Gyr dairy cattle (Bos indicus). Genetics and Molecular Research, 12, 4036-4045.
Peters, M. W., Pursley, J. R., 2002. Fertility of lactating dairy cows treated with Ovsynch after presynchronization injections of PGF2α and GnRH. Journal of Dairy Science 85, 2403–2406.
Pritchard, T., Coffey, M., Mrode, R., Wall, E., 2013. Genetic parameters for production, health, fertility and longevity traits in dairy cows. Animal, 7, 34–46.
Rodrigues, A. E., Marques, J. R. F., Araújo, C. V. D., Camargo Júnior, R. N. C., Dias, L. D. N. S., 2010. Estimação de parâmetros genéticos para características produtivas em búfalos na Amazônia Oriental. Arquivo Brasileiro de Medicina Veterinária e Zootecnia, 62, 712-717.
Sun, C., Madsen, P., Lund, M.S., Zhang, Y., Nielsen, U.S., Su, G., 2010. Improvement in genetic evaluation of female fertility in dairy cattle using multiple-trait models including milk production traits. Journal of Animal Science, 88, 871-878.
Tiezzi, F., Maltecca, C., Cecchinato, A., Penasa, M., Bittante, G., 2012. Genetic parameters for fertility of dairy heifers and cows at different parities and relationships with production traits in first lactation. Journal of Animal Science 95, 7355–7362.
Tyriseva, A. M., Meyer, K., Fikse, W. F., Ducrocq, V., Jakobsen, J., Lidauer, M. H., Mantysaari, E. A., 2011. Principal component and factor analytic models in international sire evaluation. Genetics Seletion Evolution, 43, 33.
Veerkamp, R. F., Koenen, E. P. C., De Jong, G., 2001. Genetic Correlations Among Body Condition Score, Yield, and Fertility in First-Parity Cows Estimated by Random Regression Models. Journal of Animal Science, 84, 2327–2335.
Wiltbank, M.C., Baez, G. M., Garcia-Guerra, A., Toledo, M. Z., Monteiro, P. L. J., Melo, L. F., Ochoa, J. C., Santos, J. E. P., Sartori, R., 2016. Pivotal periods for pregnancy loss during the first trimester of gestation in lactating dairy cows. Theriogenology, 86, 239-253.
Wolfinger, R. D., 1993. Covariance structure selection in general mixed models. Communications in Statistics - Simulation and Computation, 22, 1079-1106.
Acknowledgments
The authors would like to thank the Coordenação de Aperfeiçoamento de Pessoal de Nível Superior – Brasil (CAPES) – Finance Code 001 for financially supporting this study and Agrindus S.A. for providing the data used in this study.
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This study was financed in part by the Coordenação de Aperfeiçoamento de Pessoal de Nível Superior – Brasil (CAPES) – Finance Code 001.
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Dominguez-Castaño, P., Toro Ospina, A.M., El Faro, L. et al. Genetic principal components for reproductive and productive traits in Holstein cows reared under tropical conditions. Trop Anim Health Prod 53, 193 (2021). https://doi.org/10.1007/s11250-021-02639-w
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DOI: https://doi.org/10.1007/s11250-021-02639-w