Abstract
In this paper, we consider a model of soil water and nutrient transport with plant root uptake. The geometry of the plant root system is explicitly taken into account in the soil model. We first describe our modeling approach. Then, we introduce an adaptive mesh refinement procedure enabling us to accurately capture the geometry of the root system and small-scale phenomena in the rhizosphere. Finally, we present a domain decomposition technique for solving the problems arising from the soil model as well as some numerical results.
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Barber, S.A.: Soil Nutrient Bioavailability: a Mechanistic Approach. Wiley-Interscience, New York (1984)
Barraclough, P.B., Tinker, P.B.: The determination of ionic diffusion coefficients in field soils. I. Diffusion coefficients in sieved soils in relation to water content and bulk density. J. Soil Sci. 32(2), 225–236 (1981)
Berninger, H.: Domain decomposition methods for elliptic problems with jumping nonlinearities and application to the richards equation. Ph.D. thesis, Freie Universität Berlin (2007)
Celia, M.A., Bouloutas, E.T., Zarba, R.L.: A general mass-conservative numerical solution for the unsaturated flow equation. Water Resour. Res. 26(7), 1483–1496 (1990)
Dobrzynski, C.: MMG3D: user guide. Rapport Technique RT-0422, INRIA (2012)
Doussan, C., Pagès, L., Vercambre, G.: Modelling of the hydraulic architecture of root systems: an integrated approach to water absorption-model description. Ann. Bot. 81, 213–223 (1998)
Doussan, C., Pierret, A., Garrigues, E., Pagès, L.: Water uptake by plant roots: II-modelling of water transfer in the soil–root-system with explicit account of flow within the root system—comparison with experiments. Plant Soil 283(1–2), 99–117 (2006)
Fiscus, E.L.: The interaction between osmotic- and pressure-induced water flow in plant roots. Plant Physiol. 55(5), 917–922 (1975)
Hecht, F.: New development in freefem++. J. Numer. Math. 20, 251–266 (2013)
Hopmans, J.W., Bristow, K.L.: Current capabilities and future needs of root water and nutrient uptake modeling. In: Sparks, D.L. (ed.) Advances in Agronomy, vol. 77, pp. 103–183. Academic, London (2002)
Javaux, M., Schröder, T., Vanderborght, J., Vereecken, H.: Use of a three-dimensional detailed modeling approach for predicting root water uptake. Vadose Zone J. 7, 1079–1088 (2008)
Ji, S.H., Park, Y.J., Sudicky, E.A., Sykes, J.F.: A generalized transformation approach for simulating steady-state variably-saturated subsurface flow. Adv. Water Resour. 31(2), 313–323 (2008)
Jolivet, P., Dolean, V., Hecht, F., Nataf, F., Prud’homme, C., Spillane, N.: High performance domain decomposition methods on massively parallel architectures with freefem++. J. Numer. Math. 20, 287–302 (2013)
Karypis, G., Kumar, V.: A fast and high quality multilevel scheme for partitioning irregular graphs. SIAM J. Scient. Comput. 20, 359–392 (1998)
Kochian, L.V., Lucas, W.J.: Potassium transport in corn roots: I. Resolution of kinetics into a saturable and linear component. Plant Physiol. 70(6), 1723–1731 (1982)
Kool, J.B., Parker, J.C.: Development and evaluation of closed-form expressions for hysteretic soil hydraulic properties. Water Resour. Res. 23(1), 105–114 (1987)
Landsberg, J., Fowkes, N.: Water movement through plant roots. Ann. Bot. 42(1), 493–508 (1978)
Leitner, D., Klepsch, S., Bodner, G., Schnepf, A.: A dynamic root system growth model based on l-systems. Plant Soil 332(1–2), 177–192 (2010)
McGechan, M., Lewis, D.: Sorption of phosphorus by soil, part 1: principles, equations and models. Biosyst. Eng. 82, 1–24 (2002)
Pop, I.S.: Error estimates for a time discretization method for the richards’ equation. Computation. Geosci. 6(2), 141–160 (2002)
Saaltink, M.W., Carrera, J., Olivella, S.: Mass balance errors when solving the convective form of the transport equation in transient flow problems. Water Resour. Res. 40(5), W05107 (2004)
Šimůnek, J., Hopmans, J.W.: Modeling compensated root water and nutrient uptake. Ecol. Modell. 220(4), 505–521 (2009)
Somma, F., Hopmans, J., Clausnitzer, V.: Transient three-dimensional modeling of soil water and solute transport with simultaneous root growth, root water and nutrient uptake. Plant Soil 202(2), 281–293 (1998)
Stevens, D., Power, H.: A scalable and implicit meshless RBF method for the 3D unsteady nonlinear richards equation with single and multi-zone domains. Int. J. Numer. Methods Eng. 85(2), 135–163 (2011)
Tuzet, A., Perrier, A., Leuning, R.: A coupled model of stomatal conductance, photosynthesis and transpiration. Plant Cell Environ 26(7), 1097–1116 (2003)
Varado, N., Braud, I., Ross, P., Haverkamp, R.: Assessment of an efficient numerical solution of the 1D richards’ equation on bare soil. J. Hydrol. 323(1–4), 244–257 (2006)
Vohralík, M., Wheeler, M.: A posteriori error estimates, stopping criteria, and adaptivity for two-phase flows. Computation. Geosci. 17(5), 789–812 (2013)
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We thank Pierre Jolivet for his valuable insights on FreeFem++ and domain decomposition methods.
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Tournier, PH., Hecht, F. & Comte, M. Finite Element Model of Soil Water and Nutrient Transport with Root Uptake: Explicit Geometry and Unstructured Adaptive Meshing. Transp Porous Med 106, 487–504 (2015). https://doi.org/10.1007/s11242-014-0411-7
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DOI: https://doi.org/10.1007/s11242-014-0411-7