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Using Interactive Data Visualizations for Exploratory Analysis in Undergraduate Genomics Coursework: Field Study Findings and Guidelines

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Abstract

Life scientists increasingly use visual analytics to explore large data sets and generate hypotheses. Undergraduate biology majors should be learning these same methods. Yet visual analytics is one of the most underdeveloped areas of undergraduate biology education. This study sought to determine the feasibility of undergraduate biology majors conducting exploratory analysis using the same interactive data visualizations as practicing scientists. We examined 22 upper level undergraduates in a genomics course as they engaged in a case-based inquiry with an interactive heat map. We qualitatively and quantitatively analyzed students’ visual analytic behaviors, reasoning and outcomes to identify student performance patterns, commonly shared efficiencies and task completion. We analyzed students’ successes and difficulties in applying knowledge and skills relevant to the visual analytics case and related gaps in knowledge and skill to associated tool designs. Findings show that undergraduate engagement in visual analytics is feasible and could be further strengthened through tool usability improvements. We identify these improvements. We speculate, as well, on instructional considerations that our findings suggested may also enhance visual analytics in case-based modules.

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References

  • AAAS (2011) Vision and change in undergraduate education: final report. AAAS, Washington

    Google Scholar 

  • Anderson CW, Bauerle C, DePass A, Donovan S, Drew S, Ebert-May D, Gross L, Hoskins SG, Labov J, Lopatto D, Lynn D, McClatchey W, Varma-Nelson P, O’Connor C, Pelaez P, Poston M, Singer S, Tanner K, Wessner D, White H, Withers M, Wood W, Wubah D (2012) Vision and change in undergraduate biology education: a call to action. AAAS, Washington. Accessed 5 Aug 2015 at: http://visionandchange.org/finalreport/

  • Bae GY, Flombaum JI (2013) Two items remembered as precisely as one: how integral features can improve visual working memory. Psychol Sci 24(10):2038–2047

    Article  Google Scholar 

  • Bowling BV, Acra EE, Wang L, Myers MF, Dean GE, Markle GC, Moskalik CL, Huether CA (2008) Development and evaluation of a genetics literacy assessment instrument for undergraduates. Genet Educ 178(1):15–22

    Article  Google Scholar 

  • Colon-Berlingeri M, Burrowes P (2011) Teaching biology through statistics: application of statistical methods in genetics and zoology course. CBE-Life Sci Educ 10:259–267

    Article  Google Scholar 

  • Creswell J, Clark V (2010) Designing and conducting mixed methods research, 2nd edn. SAGE Publications, Thousand Oaks

    Google Scholar 

  • Crow A, Dirks C, Wenderoth MP (2008) Biology in bloom: implementing Bloom’s taxonomy to enhance student leraning in biology. CBE-Life Sci Educ 7:368–381

    Article  Google Scholar 

  • Gehlenborg N, O’Donoghue SI, Baliga N, Goesmann A, Hibbs MA, Kitano H et al (2010) Visualization of omics data for systems biology. Nat Methods 7(3):S56–S68

    Article  Google Scholar 

  • Goodwin C (1997) The blackness of black: color categories as situated practice. In: Resnick L, Saljo R, Pontecorvo C, Burge B (eds) Discourse, tools, and reasoning: essays on situated cognition. Springer, Berlin, pp 111–140

    Chapter  Google Scholar 

  • Hughes T, Marton M, Jones A et al (2000) Functional discovery via a compendium of expression profiles. Cell 102:109–126

    Article  Google Scholar 

  • Iskopehi RD (2014) Visual analytics in biology curriculum network. AAAS vision and change in undergraduate biology education initiative. Accessed 7 Dec 2014 at: http://visionandchange.org/page/3/?s=vision+and+change+a+call+to+action

  • Johnson C, Moorhead R, Munzer T, Pfister H, Pheingans P, Yoo T (2006) NIH-NSF visualization research challenges report. Accessed 5 Aug 2015 at: http://tab.computer.org/vgtc/vrc/NIH-NSF-VRC-Report-Final.pdf

  • Keim D, Kohlhammer J, Ellis G, Mansmann F (eds) (2010) Mastering the information age solving problems with visual analytics. Eurographics Association, Goslar

    Google Scholar 

  • Kumar A (2005) Teaching systems biology: an active learning approach. Cell Biol Educ 4:323–329

    Article  Google Scholar 

  • Lavie N (2000) Selective attention and cognitive control: dissociating attentional functions through different types of load. In: Monsell S, Drive J (eds) Control of cognitive processes: attention and performance XVIII. MIT Press, Cambridge, pp 175–194

    Google Scholar 

  • Lee SWL, Tsai CC (2013) Technology-supported learning in secondary and undergraduate biological education: observations from literature review. J Sci Educ Technol 22:226–233

    Article  Google Scholar 

  • Lemons P, Lemons JD (2013) Questions for assessing higher order cognitive skills: it’s not just Bloom’s. CBE-Life Sci Educ 12:47–58

    Article  Google Scholar 

  • Lengler R (2006) Identifying the competencies of ‘visual literacy’: a prerequisite for knowledge visualization. In: Proceedings of the 10th annual conference on information visualization, pp 232–236, London, England

  • Levy D (2013) How dynamic visualization technology can support molecular reasoning. J Sci Educ Technol 22:702–717

    Article  Google Scholar 

  • Liu Z, Nersessian N, Stasko J (2008) Distributed cognition as a theoretical framework for information visualization. IEEE Trans Visual Comput Graphics 14(6):1173–1180

    Article  Google Scholar 

  • Lobata J, Rhodehamel B, Hohensee C (2012) “Noticing” as an alternative transfer of learning process. J Learn Sci 21(3):433–482

    Article  Google Scholar 

  • Marshall L, Bays PM (2013) Obligatory encoding of task-irrelevant features depletes working memory resources. J Vision 13(2):21

    Article  Google Scholar 

  • McElhinny T, Dougherty M, Bowling B, Libarkin J (2014) The status of genetics curriculum in higher education in the United States: goals and assessment. Sci Educ 23:445–464

    Article  Google Scholar 

  • Meyer DZ, Meyer AA, Nabb KA, Connell MG, Avery LM (2013) A theoretical and empirical exploration of intrinsic problems in designing inquiry activities. Res Sci Educ 43:57–76

    Article  Google Scholar 

  • National Research Council (NRC) (2003) BIO2010: transforming undergraduate education for future research biologists. National Academies Press, Washington

    Google Scholar 

  • National Research Council (NRC) (2009) A new biology for the twenty-first century: ensuring the United States leads the coming biology revolution. National Academies Press, Washington

    Google Scholar 

  • National Research Council (NRC) (2010) Discipline-based education research: understanding and improving learning in undergraduate science and engineering. The National Academies Press, Washington

    Google Scholar 

  • Ngyuen N, Nelson A, Wilson T (2012) Computer visualizations: factors that influence spatial anatomy comprehension. Anat Sci Educ 5:98–108

    Article  Google Scholar 

  • Nielsen J (1993) Response time: the three important limits. Accessed 11 Dec 2014 at: http://www.nngroup.com/articles/response-times-3-important-limits/

  • Oviatt S, Cohen A (2010) Toward high-performance communications interfaces for science problem solving. J Sci Educ Technol 19:515–531

    Article  Google Scholar 

  • Peer A, Shneiderman B (2008) Integrating statistics and visualization: case studies of gaining clarity during exploratory analysis. In: Proceedings of the SIGCHI conference on human factors in computing systems (CHI’08), pp 265–274

  • Peters VL, Songer NB (2013) Evaluating the usability of a professional modeling tool repurposed for middle school learning. J Sci Educ Technol 22(5):681–696

    Article  Google Scholar 

  • Quintana C, Reiser BJ, Davis EA, Krajcik J, Fretz E, Duncan RG et al (2004) A scaffolding design framework for software to support science inquiry. J Learn Sci 13:337–386

    Article  Google Scholar 

  • Sadler T, McKinney L (2010) Scientific research for undergraduate students: a review of the literature. J Coll Sci Teach 39(5):43–49

    Google Scholar 

  • Sadler T, McKinney L, Hogan K (2000) Exploring a process view of students’ knowledge about the nature of science. Sci Educ 84:51–70

    Article  Google Scholar 

  • Saraiya P, North C, Duca K (2005a) Visualizing biological pathways: requirements analysis, systems evaluation, and research agenda. Inf Vis 4:191–205

    Article  Google Scholar 

  • Saraiya P, North C, Duca K (2005b) An insight-based methodology for evaluating bioinformatics visualizations. IEEE Trans Visual Comput Graphics 11(4):443–457

    Article  Google Scholar 

  • Scholtz J (2011) Developing guidelines for assessing visual analytics environments. J Inf Vis 10(3):212–231

    Article  Google Scholar 

  • Shubert C, Ceraj I, Riley J (2009) Bringing research tools into the classroom. J Comput Math Sci Teach 28(4):405–421

    Google Scholar 

  • Smolinski T (2010) Computer literacy for life sciences: helping the digital-era biology undergraduates face today’s research. CBE Life Sci Educ 9:357–363

    Article  Google Scholar 

  • Songer N, Kelcey B, Gotwals A (2009) How and when does complex reasoning occur? J Res Sci Teach 46(6):610–631

    Article  Google Scholar 

  • Spiro RJ, Feltovich PJ, Jacobson MJ, Coulson RL (1992) Cognitive flexibility, constructivism and hypertext: random access instruction for advanced knowledge acquisition in ill-structured domains. In: Duffy T, Jonassen D (eds) Constructivism and the technology of Instruction. Erlbaum, Hillsdale

    Google Scholar 

  • Su G (2013) Omics data exploration: across scales and dimensions. Unpublished doctoral dissertation. University of Michigan, Ann Arbor, Michigan

  • Trujillo C, Cooper M, Klymkowsky MW (2012) Using graph-based assessments within Socratic tutorials to reveal and refine students’ analytical thinking about molecular networks. Biochem Mol Biol Educ 40(2):100–107

    Article  Google Scholar 

  • Wang X, Dou D, Butkiewicz T, Bier E, Ribarsky W (2011) A two stage framework for designing visual analytics systems in organizational environments. In: Proceedings of the IEEE visual analytics science and technology conference. Providence, RI

  • Wefer S, Sheppard K (2008) Bioinformatics in high school biology curricula: a study of state science standards. CBE-Life Sci Educ 7:155–162

    Article  Google Scholar 

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Acknowledgments

This study was funded by an NLM grant from the NIH, #1R01LM009812-01A2. We also would like to thank Juanita Lyons for her valuable contributions to the data analysis and Jean Song and Andy Lin for their help during the classroom module.

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Correspondence to Barbara Mirel.

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Mirel, B., Kumar, A., Nong, P. et al. Using Interactive Data Visualizations for Exploratory Analysis in Undergraduate Genomics Coursework: Field Study Findings and Guidelines. J Sci Educ Technol 25, 91–110 (2016). https://doi.org/10.1007/s10956-015-9579-z

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