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Integrative data system for monitoring biota and natural habitats in the Israeli Eastern Mediterranean marine environment

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Abstract

An integrative data system for monitoring the biota of the Mediterranean waters of Israel as well as selected records from adjacent Levantine basin regions is presented here, aimed at providing data and research tools for long-term bio-geographic and ecological studies and more important, providing background data for assisting governmental regulators to establish educated habitat-oriented environmental policy. The system relies on the geographic information system (GIS) online map-based platform and contains at present the following components: biotic database of ~ 170,000 recorded sampling events; uniform habitat maps of 63 benthic habitats and 2 pelagic ones, constructed using relevant bathymetric features and biotic community compositions; bathymetric hill-shade map; depth contours; raster depth grid and human interference map. Other informative auxiliary maps are planned to be added (e.g., map of potential pockmark sites, detailed maps of tiny carbonate crust nolls and more). A number of 883 cited documents were listed by us for potential extraction of sampling efforts, most of them are available to us as PDFs  and are available also to the users, excluding copyright-protected ones. Forty-three major projects were depicted in addition to a variety of small studies (e.g., university theses). Thirty-five sampling devices were documented and described, and 3187 species-level identifications were already recorded. In addition, the system provides access to description of sampling devices and pictures of species and seascapes. New data is continuously deposited to the system and the system is flexible, allowing future addition of new types of information. The system site is accessible through the link: https://experience.arcgis.com/experience/40e86605ff4d4e5096ed2c901fec2a2f.

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Data availability

The article presents a biotic database which is publicly available through the link:https://experience.arcgis.com/experience/40e86605ff4d4e5096ed2c901fec2a2fexcluding documents which are under copyright protection. Potentially, submitted but still unpublished data will be temporarily publicly unavailable upon the request of the submitting researchers.

References

  • Ahyong, S., Boyko, C. B., Bailly, N., Bernot, J. Bieler, R., Brandão, S. N., Daly, M., De Grave, S., Gofas, S., Hernandez, F., Hughes, L., Neubauer, T.A., Paulay, G., Boydens, B., Decock, W., Dekeyzer, S., Vandepitte, L., Vanhoorne, B., Adlard, R., … & Zullini, A. (2023). World Register of Marine Species. Available from https://www.marinespecies.org at VLIZ. Accessed 2023–06–02. https://doi.org/10.14284/170

  • Almagor, G., & Garfunkel, Z. (1979). Submarine slumping on the continental margin of Israel and northern Sinai. The American Association of Petroleum Geologists Bulletin, 63, 324–340. https://doi.org/10.1306/C1EA5607-16C9-11D7-8645000102C1865D

    Article  Google Scholar 

  • Almagor, G., & Hall, J. K. (1984). Morphology and bathymetry of the Mediterranean continental margin of Israel. Israel Geological Survey Bulletin, 77, 31pp.

  • Bean, T. P., Greenwood, N., Beckett, R., Biermann, L., & Bignel, l J. P., Brant, J. L., Copp, G. H., Devlin, M. J., Dye, S., Feist, S. W., Fernand, L., Foden, D., Hyder, K., Jenkins, C. M., van der Kooij, J., Kröger, S., Kupschus, S., Leech, C., Leonard, K. S, … & Righton, D. (2017). A review of the tools used for marine monitoring in the UK: Combining historic and contemporary methods with modeling and socioeconomics to fulfill legislative needs and scientific ambitions. Frontiers in Marine Science, 4, 263. https://doi.org/10.3389/fmars.2017.00263

    Article  Google Scholar 

  • Berman-Frank, I., & Rahav, E. (2012). Nitrogen fixation as a source for new production in the Mediterranean Sea: A review. In N. E. Stambler (Ed.), Life in the Mediterranean Sea: A look at habitat changes (pp. 199–226). Nova Science Publishers.

    Google Scholar 

  • Bolyen, E., Rideout, J. R., Dillon, M. R., Bokulich, N. A, Abnet, C. C., Al-Ghalith, G. A., Alexander, H., Alm, E. J., Arumugam, M., Asnicar, F., Bai, Y., Bisanz, J. E., Bittinger, K., Brejnrod, A., Brislawn, C. J., Brown, C. T., Callahan, B. J., Caraballo-Rodríguez, A. M., Chase, J., Cope, E. K., … & Caporaso J. G. (2019). Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nature Biotechnology 37, 852–857. https://doi.org/10.1038/s41587-019-0209-9

  • Danovaro, R., Company, J-B., Corinaldesi, C., D’Onghia, G., Galil, B., Gambi, C., Gooday, A. J., Lampadariou, N., Luna, G-M., Morigi, C., Olu, K., Polymenakou, P., Ramirez-Llodra, E., Sabbatini, A., Sardà, F., Sibuet, M., & Tselepides, A. (2010). Deep-sea biodiversity in the Mediterranean Sea: The known, the unknown, and the unknowable. PLoS ONE, 5(8), e11832. https://doi.org/10.1371/journal. pone.0011832.

  • Danovaro, R., Carugati, L., Berzano, M., Cahill, A. E., Carvalho, S., Chenuil, A., Corinaldesi, C., Cristina S., David, R., Dell’Anno A, Dzhembekova, N., Garcés, E., Gasol, J. M., Goela, P., Féral, J-P., Ferrera, I., Forster, R. M., Kurekin, A. A., Rastelli, E., … & Borja A. (2016). Implementing and innovating marine monitoring approaches for assessing marine environmental status. Frontiers in Marine Science, 3, 213. https://doi.org/10.3389/fmars.2016.00213

  • Eruteya, O. E., Reshef, M., Ben-Avraham, Z., & Waldmann, N. (2018). Gas escape along the Palmachim disturbance in the Levant basin, offshore Israel. Marine and Petroleum Geology, 92, 868–879. https://doi.org/10.1016/j.marpetgeo.2018.01.007

    Article  Google Scholar 

  • Ezra, O. (2017). Topology and formation settings of deep-water carbonates at the boundaries of the Palmahim Disturbance, offshore Israel, MSc thesis; The Moses Strauss Department of Marine Geosciences, University of Haifa, Haifa, Israel.

  • Galil, B. S., & Lewinsohn, C. H. (1981). Macrobenthic communities of the eastern Mediterranean continental shelf. P.S.Z.N.I: Marine Ecology, 2(4), 343–352.

  • Galil, B. S., Marchini, A., & Occhipinti-Ambrogi, A. (2018). East is east and West is west? Management of marine bioinvasions in the Mediterranean Sea. Estuarine Coastal Shelf Science, 201, 7–16.

    Article  Google Scholar 

  • Gielings, R., Fais, M., Fontaneto, D., Creer, S., Costa, F. O., Renema, W., & Macher, J. N. (2021). DNA metabarcoding methods for the study of marine benthic meiofauna: A review. Frontiers in Marine Science, 8, 730063. https://doi.org/10.3389/fmars.2021.730063

  • Gvirtzman, Z., Reshef, M., Buch-Leviatan, O., Groves-Gidney, G., Karcz, Z., Makovsky, Y., & Ben-Avraham, Z. (2015). Bathymetry of the Levant basin: Interaction of salt-tectonics and surficial mass movements. Marine Geology, 360, 25–39.

    Article  Google Scholar 

  • Harris, P. T., Macmillan-Lawler, M., Rupp, J., & Baker, E. K. (2014). Geomorphology of the oceans. Marine Geology, 352, 4–24.

    Article  Google Scholar 

  • Hall, J. K., Lippman, S., Gardosh, M., Tibor, G., Sade, A. R., Sade, H., Golan, A., Amit, G., Gur-Arie, L., & Nissim, I. (2015). A new bathymetric map for the Israeli EEZ: Preliminary results. Israeli Ministry of Energy and Water, Natural Resources Administration, report NEFT_239_2015, 11 pp.

  • Harbuzov, Z., Farberova, V., Tom, M., Pallavicini, A., Stanković, D., Lotan T., & Lubinevsky, H. (2022). Amplicon sequence variant-based meiofaunal community composition revealed by DADA2 tool is compatible with species composition. Marine Genomics, 65, 100980. https://doi.org/10.1016/j.margen.2022.100980

  • Hebert, P. D. N., Cywinska, A., Ball, S. L., & de Waard, J. R. (2003). Biological identifications through DNA barcodes. Proceedings of the Royal Society London B, 270, 313–321.

    Article  CAS  Google Scholar 

  • Herut, B., Rubin-Blum, M., Sisma-Ventura, G., Jacobson, Y., Bialik, O. M., Ozer, T., Lawal, M. A., Giladi, A., Kanari, M., Antler, G., & Makovsky, Y. (2022). Discovery and chemical composition of the east-most deep-sea anoxic brine pools in the Eastern Mediterranean Sea. Frontiers in Marine Science, 9, 1040681. https://doi.org/10.3389/fmars.2022.1040681

    Article  Google Scholar 

  • Hyams-Kaphzan, O., Lubinevsky, H., Crouvi, O., Harlavan, Y., Herut, B., Kanari, M., Tom, M., & Almogi-Labin, A. (2018). Live and dead deep-sea benthic foraminiferal macrofauna of the Levantine basin (SE Mediterranean) and their ecological characteristics. Deep-Sea Research, Part I, 136, 72–83.

    Article  CAS  Google Scholar 

  • Jaijel, R., Biton, E., Weinstein, Y., Ozer, T., & Katz, T. (2023). Observations of turbidity currents in a small, slope-confined submarine canyon in the Eastern Mediterranean Sea. Earth and Planetary Science Letters, 604, 118008.

    Article  CAS  Google Scholar 

  • Kanari, M., Tibor, G., Hall, J. K., Ketter, T., Lang, G., & Schattner, U. (2020). Sediment transport mechanisms revealed by quantitative analyses of seafloor morphology: New evidence from multibeam bathymetry of the Israel exclusive economic zone. Marine and Petroleum Geology, 114, 104224.

    Article  Google Scholar 

  • Katz, O., Reuven, E., & Aharonov, E. (2015). Submarine landslides and fault scarps along the eastern Mediterranean Israeli continental-slope. Marine Geology, 369, 100–115.

    Article  Google Scholar 

  • Lawal, M .A., Pecher, I., Bialik, O .M., Waldmann, N .D., Bialas, J., Koren, Z., & Makovsky, Y. (2022). Multi-level composition: A new method for revealing complex geological features in three-dimensional seismic reflection data. Marine Petroleum Geology, 146, 105938. https://doi.org/10.1016/J.MARPETGEO.2022.105938

  • Lindenmayer, D. B., & Likens, G. E. (2010). The science and application of ecological monitoring. Biological Conservation, 143(6), 1317–1328. https://doi.org/10.1016/j.biocon.2010.02.013

    Article  Google Scholar 

  • Lubinevsky, H., Hyams-Kaphzan, O., Almogi-Labin, A., Silverman, J., Harlavan, Y., Crouvi, O., Herut, B., Kanari, M., & Tom, M. (2017). Deep-sea soft bottom infaunal communities of the Levantine Basin (SE Mediterranean) and their shaping factors. Marine Biology, 164, 36. 12 pp.

  • Lubinevsky, H., Herut, B., & Tom, M. (2019). Monitoring long-term spatial and temporal trends of the infaunal community characteristics along the shallow waters of the Mediterranean coast of Israel. Environmental Monitoring and Assessment, 191(12), 724.

    Article  CAS  Google Scholar 

  • Lubinevsky, H., Tom, M., & Bird, G. (2022). Tanaidacea (Crustacea: Malacostraca: Peracarida) from soft-sediment shelf habitats off the Mediterranean coast of Israel (Levant Sea) –Taxonomy, faunistics and ecological aspects. Mediterranean Marine Science, 23(3).

  • Lubinevsky, H., Tom, M., & Koulouri, P. (2023). Cumacea (Crustacea: Malacostraca: Peracarida) from the soft-sediment habitats off the Mediterranean coast of Israel. Marine Mediterranean Science, accepted for publication.

  • Makovsky, Y., Rüggeberg, A., Bialik, O., Foubert, A., Almogi-Labin, A., Alter, Y., Bampas, V., Basso, D., Feenstra, E., Fentimen, R., Friedheim, O., Hall, E., Hazan, O., Herut, B., Kallergis, E., Karageorgis, A., Kolountzakis, A., Manousakis, L., Nikolaidis, M., Pantazoglou, F., Rahav, E., Renieris, P., Schleinkofer, N., Sisma-Ventura, G., Stasnios, V., & Weissman, A. (2016). EUROFLEETS2 Cruise summary report SEMSEEP - R/V AEGAEO Cruise EUROFLEETS2 SEMSEEP. 62 pp.

  • Makovsky, Y,. Bialik O., Neuman A., Lawal, M., Antler, G., Kanari, M., Giladi, A., & Rubin-Blum, M. (2021). AUV surveying of seepage edifice at the seafloor of western Palmahim disturbance and its implications, AMEL_092021.1.REV0.1 report, Submitted to the Israeli Ministry of Energy.

  • Makovsky, Y., Bialik O., Lawal, M. A, Meilijson A., Neuman A., Waldmann N. D., Kanari, M., Giladi, A., & Rubin-Blum, M. (2022). Strategic mapping of methane seepage across the EEZ of Israel. IMEL_27122022.REV0 report submitted to the Israeli Ministry of Energy - Final report.

  • Marine Ventures International. (2018). Leviathan field development project. Prepared for Nobel Energy Mediterranean LTD. 188 pp.

  • Moore, C. M., Mills, M. M., Arrigo, K. R., Berman-Frank, I., Bopp, L., Boyd, P. W., Galbraith, E. D., Geider, R. J., Guieu, C., Jaccard, S. L., Jickells, T. D., La Roche, J., Lenton, T. M., Mahowald, N. M., Marañón, E., Marinov, I., Moore, J. K., Nakatsuka, T., Oschlies, A., … & Ulloa, O. (2013). Processes and patterns of oceanic nutrient limitation. Nature Geoscience, 6, 701–710. https://doi.org/10.1038/ngeo1765

  • Rilov, G., Peleg, O., & Guy-Haim, T. (2019) The restructuring of Levant reefs by aliens, ocean warming and overfishing - Implications for species interactions and ecosystem functions. In: Interactions in the Marine Benthos, Chapter 9 (Eds. Hawkins, S. J., Bohn, K., Firth, L. B. William G. A.), Cambridge University Press, 978–1–108–41608–5, 214–236.

  • Rubin-Blum, M., Antler, G., Tsadok, R., Shemesh, E., Austin, J. A., Jr., Coleman, D. F., Goodman-Tchernov, B. N., Ben-Avraham, Z., & Tchernov, D. (2014a). First evidence for the presence of iron oxidizing Zetaproteobacteria at the Levantine continental margins. PLoS ONE, 9, e91456.

    Article  Google Scholar 

  • Rubin‑Blum, M., Tsadok, R., Shemesh, E., Goodman‑Tchernov, B. N., Austin, J. A. Jr, Coleman, D. F., Ben‑Avraham, Z., Gruber, D. F., Tchernov, D. (2014b). Distribution of the Lamellibrachia spp. (Siboglinidae, Annelida) and their trophosome endosymbiont phylotypes in the Mediterranean Sea. Marine Biologyhttps://doi.org/10.1007/s00227-014-2413-y

  • Rubin-Blum, M., Antler, G., Turchyn, A. V., Tsadok, R., Goodman-Tchernov, B. N., Shemesh, E., Austin, J. A., Jr., Coleman, D. F., Makovsky, Y., Sivan, O., & Tchernov, D. (2014c). Hydrocarbon-related microbial processes in the deep sediments of the Eastern Mediterranean Levantine Basin. FEMS Microbial Ecology, 87, 780–796.

    Article  CAS  Google Scholar 

  • Rubin-Blum, M., Shemesh, E., Goodman-Tchernov, B., Coleman, D. F., Ben-Avraham, Z., & Tchernov, D. (2014d). Cold seep biogenic carbonate crust in the Levantine basin is inhabited by burrowing Phascolosoma aff. turnerae, a sipunculan worm hosting a distinctive microbiota. Deep-Sea Research I, 90, 17–26.

    Article  CAS  Google Scholar 

  • Safriel, U. N. (1974). Vermetid gastropods and intertidal reefs in Israel and Bermuda. Science, 186, 1113–1115. https://doi.org/10.1126/science.186.4169.1113

    Article  CAS  Google Scholar 

  • Schattner, U., & Lazar, M. (2016). Hierarchy of source-to-sink systems—Example from the Nile distribution across the eastern Mediterranean. Sedimentary Geology, 343, 119–131.

    Article  Google Scholar 

  • Siokou-Frangou, I., Christaki, U., Mazzocchi, M. G., Montresor, M., Ribera D’Alcala, M., Vaque, D., & Zingone, A. (2010). Plankton in the open mediterranean Sea: A review. Biogeosciences, 7, 1543–1586. https://doi.org/10.5194/bg-7-1543-2010

    Article  Google Scholar 

  • Sivan, D., & Porat, N. (2004). Evidence from luminescence for Late Pleistocene formation of calcareous aeolianite (kurkar) and paleosol (hamra) in the Carmel Coast. Israel, Palaeogeography Palaeoclimatology Palaeoecology, 211, 95–106. https://doi.org/10.1016/j.palaeo.2004.04.008

    Article  Google Scholar 

  • Tom, M., & Galil, B. (1991). The macrobenthic associations of Haifa Bay, Mediterranean coast of Israel. P.S.Z.N.I. Marine Ecology, 12(1), 75–86.

  • Tsoar, H. (2000). Geomorphology and paleogeography of the sand dunes that have formed the kurkar ridges in the coastal plain of Israel. Israel Journal of Earth Sciences, 49, 189–196.

    Article  Google Scholar 

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Acknowledgements

The Israeli Ministry of Energy and the Israel Oceanographic and Limnological Research (IOLR) and especially Mr. Ilan Nissim from the ministry and former IOLR director Prof. Barak Herut are highly appreciated. Mr. Guy Nizry is deeply thanked for the construction of the GIS online-supported site and Mr. Alex Axyonov is appreciated for his assistance in establishing the Windows Server. Dr. Dafna Zeevi-Ben-Yosef, Ms. Sivan Haviv, Ms. Eva Misrahi, and Ms. Nerina Lenart are thanked for data deposition, and Dr. Gil Rilov is appreciated for the detailed map of the coastal rocks. Applause to the huge number of people who participated in the collection of the biotic and cartographic data along the Israeli waters in the last 130 years.

Funding

The initiative to build this system and the finance came from the Israeli ministry of Energy through the Strategic Environmental Assessment (SEA) carried out by its environmental department between 2014 and to date. The Israel Oceanographic and Limnological Research (IOLR) partially supported this venture.

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Contributions

All three participants joined in planning the integrative system site and writing of the manuscript, led by Moshe Tom. Biotic data deposition was done by Moshe Tom and Hadas Lubinevsky. The biotic, habitat, and auxiliary maps were constructed by Moshe Tom (biotic maps) and Mor Kanari (habitat and auxiliary maps).

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Correspondence to Moshe Tom.

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Tom, M., Lubinevsky, H. & Kanari, M. Integrative data system for monitoring biota and natural habitats in the Israeli Eastern Mediterranean marine environment. Environ Monit Assess 195, 1068 (2023). https://doi.org/10.1007/s10661-023-11693-w

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