Skip to main content
Log in

Comparison of surface sampling methods for an extended duration outdoor biological contamination study

  • Published:
Environmental Monitoring and Assessment Aims and scope Submit manuscript

Abstract

Bacillus anthracis, the causative agent for anthrax, is a dangerous pathogen to humans and has a history as a bioterrorism agent. While sampling methods have been developed and evaluated for characterizing and clearing contaminated indoor sites, the performance of these sampling methods is unknown for use in outdoor environments. This paper presents surface sampling data for Bacillus atrophaeus spores, a surrogate for B. anthracis, from a 210-day outdoor study that evaluated the detection and recovery of spores using five different sampling methods as follows: sponge sticks, 37-mm vacuum filter cassettes, residential wet vacuums, robotic floor cleaners, and grab samples of soil, leaves, and grass. The spores were applied by spraying a liquid suspension onto the surfaces. Both asphalt and concrete surfaces were sampled by all the surface sampling methods, excluding grab sampling. Stainless steel coupons placed outdoors were additionally sampled using sponge sticks. Sampling methods differed in their ability to collect detectable spores over the duration of the study. The 37-mm vacuums and sponge sticks consistently detected spores on asphalt through day 37 and robots through day 99. The wet vacuums detected spores on asphalt for days 1 and 4, but not again until day 210. On concrete, all samplers detected spores until day 210 except for sponge stick samplers that detected spores only up until the day 99 time point. For all sampling methods, spore recoveries were higher from concrete than from asphalt surfaces. There was no statistically significant difference in recoveries of sponge sticks and 37-mm vacuums from either asphalt or concrete surfaces. Processing of grab samples was challenging due to non-target background microorganisms resulting in high detection limits for the samples.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5

Similar content being viewed by others

References

  • Abdel-Hady, A., Calfee, M. W., Aslett, D., Lee, S. D., Wyrzykowska-Ceradini, B., Delafield, F. R., May, K., & Touati, A. (2019). Alternative fast analysis method for cellulose sponge surface sampling wipes with low concentrations of Bacillus spores. Journal of Microbiological Methods, 156, 5–8.

    Article  CAS  Google Scholar 

  • Bates, D., M. Maechler, B. Bolker, S. Walker, R. Christensen and H. Singmann (2019). lme4: linear mixed-effects models using “Eigen” and S4. 2017.

  • Brown, G. S., Betty, R. G., Brockmann, J. E., Lucero, D. A., Souza, C. A., Walsh, K. S., Boucher, R. M., Tezak, M., Wilson, M. C., & Rudolph, T. (2007). Evaluation of a wipe surface sample method for collection of Bacillus spores from nonporous surfaces. Applied and Environmental Microbiology, 73(3), 706–710.

    Article  CAS  Google Scholar 

  • Calfee, M. W., Rose, L. J., Morse, S., Mattorano, D., Clayton, M., Touati, A., Griffin-Gatchalian, N., Slone, C., & McSweeney, N. (2013). Comparative evaluation of vacuum-based surface sampling methods for collection of Bacillus spores. Journal of Microbiological Methods, 95(3), 389–396.

    Article  Google Scholar 

  • Calfee, M. W., Shah, S., Mickelsen, R., Cruz, F., Karim, K., Ackelsberg, J., Gemelli, M., & Hofacre, K. (2019). Evaluation of analytical methods for the detection of Bacillus anthracis spores: compatibility with real-world samples collected from outdoor and subway surfaces EPA/600/R-19/083. Washington D.C.: Environmental Protection Agency.

    Google Scholar 

  • CDC. (2012). "Emergency Response Resources." Surface sampling procedures for Bacillus anthracis spores from smooth, non-porous surfaces Retrieved 1/6/2020, 2020, from http://www.cdc.gov/niosh/topics/emres/surface-sampling-bacillus-anthracis.html.

  • Edmonds, J. M., Collett, P. J., Valdes, E. R., Skowronski, E. W., Pellar, G. J., & Emanuel, P. A. (2009). Surface sampling of spores in dry-deposition aerosols. Applied and Environmental Microbiology, 75(1), 39–44.

    Article  CAS  Google Scholar 

  • Emanuel, P., Roos, J. W., & Niyogi, K. (2008). Sampling for biological agents in the environment. Washington D.C.: ASM Press.

    Book  Google Scholar 

  • Franco, C., & Bouri, N. (2010). Environmental decontamination following a large-scale bioterrorism attack: federal progress and remaining gaps. Biosecurity and Bioterrorism: Biodefense Strategy, Practice, And Science, 8(2), 107–117.

    Article  Google Scholar 

  • Gallardo, V. J., Morris, B. J., & Rhodes, E. R. (2019). The use of hollow fiber dialysis filters operated in axial flow mode for recovery of microorganisms in large volume water samples with high loadings of particulate matter. Journal of Microbiological Methods, 160, 143–153.

    Article  CAS  Google Scholar 

  • Gulledge, J., Luna, V., Luna, A., Zartman, R., & Cannons, A. (2010). Detection of low numbers of Bacillus anthracis spores in three soils using five commercial DNA extraction methods with and without an enrichment step. Journal of Applied Microbiology, 109(5), 1509–1520.

    CAS  Google Scholar 

  • Hodges, L. R., Rose, L. J., O'Connell, H., & Arduino, M. J. (2010). National validation study of a swab protocol for the recovery of Bacillus anthracis spores from surfaces. Journal of Microbiological Methods, 81(2), 141–146.

    Article  CAS  Google Scholar 

  • Kuznetsova, A., Brockhoff, P. B., & Christensen, R. H. B. (2017). lmerTest package: tests in linear mixed effects models. Journal of Statistical Software, 82(13), 1–26. https://doi.org/10.18637/jss.v082.i13.

  • Lee, S. D., Calfee, M. W., Mickelsen, L., Wolfe, S., Griffin, J., Clayton, M., Griffin-Gatchalian, N., & Touati, A. (2013). Evaluation of surface sampling for Bacillus spores using commercially available cleaning robots. Environmental Science & Technology, 47(6), 2595–2601.

    Article  CAS  Google Scholar 

  • Lee, S. D., Calfee, M. W., Mickelsen, L., Clayton, M., & Touati, A. (2014). Scenario-based evaluation of commercially available cleaning robots for collection of Bacillus spores from environmental surfaces. Remediation Journal, 24(2), 123–133.

    Article  Google Scholar 

  • Leitenberg, M., Zilinskas, R. A., & Kuhn, J. H. (2012). The soviet biological weapons program: A history. Harvard University Press.

  • Piepel, G. F., Amidan, B. G., & Hu, R. (2012). Laboratory studies on surface sampling of Bacillus anthracis contamination: summary, gaps and recommendations. Journal of Applied Microbiology, 113(6), 1287–1304.

    Article  CAS  Google Scholar 

  • Rastogi, V. K., & Wallace, L. (2020). Environmental sampling and bio-decontamination—Recent progress, challenges, and future direction (pp. 195–208). Handbook on Biological Warfare Preparedness, Elsevier.

  • Rose, L. J., Hodges, L., O'Connell, H., & Noble-Wang, J. (2011). National validation study of a cellulose sponge wipe-processing method for use after sampling Bacillus anthracis spores from surfaces. Applied and Environmental Microbiology, 77(23), 8355–8359.

    Article  CAS  Google Scholar 

  • Teshale, E. H., Painter, J., Burr, G. A., Mead, P., Wright, S. V., Cseh, L. F., Zabrocki, R., Collins, R., Kelley, K. A., Hadler, J. L., Swerdlow, D. L., & m. o. t. C. A. R. Team. (2002). Environmental sampling for spores of Bacillus anthracis. Emerging Infectious Diseases, 8(10), 1083–1087.

    Article  Google Scholar 

  • U.S. EPA. (2014). USEPA/USGS sample collection protocol for bacterial pathogens in surface soil EPA/600/R-14/027. Washington DC: United States Environmental Protection Agency.

    Google Scholar 

  • U.S. EPA. (2017a). A review of biological agent sampling methods and application to a wide-area incident scenario to characterize time and resource demands EPA/600/R-17/176. United States Environmental Protection Agency.

  • U.S. EPA. (2017b). Underground transport restoration (UTR) operational technology demonstration (OTD) EPA/600/R-17/272. United States Environmental Protection Agency: Washington D.C..

    Google Scholar 

  • U.S. EPA. (2018). Evaluation of commercial wet vacuums for Bacillus spore sampling on surfaces EPA/600/R-18/158. United States Environmental Protection Agency.

  • U.S. Government Accountability Office. (2005). Anthrax detection: agencies need to validate sampling activities in order to increase confidence in negative results GAO-05-251. DC: Washington.

    Google Scholar 

Download references

Acknowledgments

We would like to thank Michael Borst and Ariamalar Selvakumar of the EPA Office of Research and Development in Edison, NJ, for hosting us at the Urban Watershed Facility. Alexander Korf of Jacobs Technology Inc. is acknowledged for the development of the quality assurance project plan and for the project management of the inoculation and first week of sampling. Lee Brush, Chris Fuller, Stella McDonald, Brian Sechrest, Jason Colon, and Timothy McArthur of Jacobs Technology Inc. are acknowledged for their execution of sample collection over the course of the study. Kathleen May of Jacobs Technology is acknowledged for the assistance in biological enumeration. Work by Jacobs Technology Inc. was performed under EPA contract number EP-C-15-008. John Lapinski and Pasquale Pozzolano of PARS Environmental are also acknowledged for their assistance with site-specific equipment and utilities. Their work was performed under EPA contract number EP-C-17-009.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to M. W. Calfee.

Ethics declarations

Disclaimer

This manuscript was subject to administrative review but does not necessarily reflect the view of the US Environmental Protection Agency. No official endorsement should be inferred, as the EPA does not endorse the purchase or sale of any commercial products or services.

Additional information

Publisher’s note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Mikelonis, A.M., Abdel-Hady, A., Aslett, D. et al. Comparison of surface sampling methods for an extended duration outdoor biological contamination study. Environ Monit Assess 192, 455 (2020). https://doi.org/10.1007/s10661-020-08434-8

Download citation

  • Received:

  • Accepted:

  • Published:

  • DOI: https://doi.org/10.1007/s10661-020-08434-8

Keywords

Navigation