Abstract
Detection of bovine and porcine in gelatin-based products is important as species fraud and product mislabeling may have a detrimental impact on customers who have health, ethical, and religious concerns about animal products. The duplex droplet digital PCR (ddPCR) assay using double-quenched probes has been developed for quantification and detection of porcine and bovine DNA in gelatin capsules. A DNA mixture derived from gelatin was found to have a limit of detection as low as 0.001 ng/µl for porcine samples and 0.01 ng/µl for bovine samples. DNA from 12 other distinct species was tested with the bovine and porcine probes, showing high specificity for this method. The test was validated using fifty-five commercial supplement and pharmaceutical capsules, of which 17 were positive for bovine and/or porcine DNA. This study shows that the duplex ddPCR is reliable for routine analysis in the identification of bovine and porcine origins for gelatin capsules.
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Abd Mutalib S, Muin NM, Abdullah A, Hassan O, Mustapha WAW, Sani NA, Maskat MY. Sensitivity of polymerase chain reaction (PCR)-southern hybridization and conventional PCR analysis for Halal authentication of gelatin capsules. LWT-Food Science and Technology. 63(1): 714–719 (2015)
Amqizal HIA, Al-Kahtani HA, Ismail EA, Hayat K, Jaswir I. Identification and verification of porcine DNA in commercial gelatin and gelatin containing processed foods. Food control. 78: 297–303 (2017)
Böhme K, Calo-Mata P, Barros-Velázquez J, Ortea I. Review of recent DNA-based methods for main food-authentication topics. Journal of Agricultural and Food Chemistry. 67(14): 3854–3864 (2019)
Bottero MT, Dalmasso A. Animal species identification in food products: evolution of biomolecular methods. The Veterinary Journal. 190(1): 34–38 (2011)
Buckley M. Species identification of bovine, ovine and porcine type 1 collagen; comparing peptide mass fingerprinting and LC-based proteomics methods. International journal of molecular sciences. 17(4): 445 (2016)
Buckley M, Collins M, Thomas‐Oates J, Wilson JC. Species identification by analysis of bone collagen using matrix‐assisted laser desorption/ionisation time‐of‐flight mass spectrometry. Rapid Communications in Mass Spectrometry: An International Journal Devoted to the Rapid Dissemination of Up‐to‐the‐Minute Research in Mass Spectrometry. 23(23): 3843–3854 (2009)
Cai H, Gu X, Scanlan, MS, Ramatlapeng DH, Lively CR. Real-time PCR assays for detection and quantitation of porcine and bovine DNA in gelatin mixtures and gelatin capsules. Journal of Food Composition and Analysis. 25(1): 83–87 (2012)
Demeke T, Dobnik D. Critical assessment of digital PCR for the detection and quantification of genetically modified organisms. Analytical and Bioanalytical Chemistry. 410(17): 4039–4050 (2018)
Doi H, Takahara T, Minamoto T, Matsuhashi S, Uchii K, Yamanaka H. Droplet digital polymerase chain reaction (PCR) outperforms real-time PCR in the detection of environmental DNA from an invasive fish species. Environmental science & technology. 49(9): 5601–5608 (2015)
Fitriani N, Rohman A. Primer rRNA-12S for detection of bovine gelatine DNA in capsule shells using real-time polymerase chain reaction. International Food Research Journal. 25(5): 1870–1875 (2018)
Floren C, Wiedemann I, Brenig B, Schütz E, Beck J. Species identification and quantification in meat and meat products using droplet digital PCR (ddPCR). Food Chemistry. 173: 1054–1058 (2015)
Grabenstein JD. What the world's religions teach, applied to vaccines and immune globulins. Vaccine. 31(16): 2011–2023 (2013)
Gudmundsson M, Hafsteinsson H. Gelatin from cod skins as affected by chemical treatments. Journal of food science. 62(1): 37–39 (1997)
Hameed AM, Asiyanbi-H T, Idris M, Fadzillah N, Mirghani MES. A review of gelatin source authentication methods. Tropical life sciences research. 29(2): 213 (2018)
Hanani ZN, Roos YH, Kerry JP. Use and application of gelatin as potential biodegradable packaging materials for food products. International journal of biological macromolecules. 71: 94–102 (2014)
Hashim D, Man YC, Norakasha R, Shuhaimi M, Salmah Y, Syahariza, Z. Potential use of Fourier transform infrared spectroscopy for differentiation of bovine and porcine gelatins. Food chemistry. 118(3): 856–860 (2010)
Hindson BJ, Ness KD, Masquelier DA, Belgrader P, Heredia NJ, Makarewicz AJ, Bright IJ, Lucero MY, Hiddessen AL, Legler TC. High-throughput droplet digital PCR system for absolute quantitation of DNA copy number. Analytical chemistry. 83(22): 8604–8610 (2011)
Jones M, Williams J, Gärtner K, Phillips R, Hurst J, Frater J. Low copy target detection by Droplet Digital PCR through application of a novel open access bioinformatic pipeline,‘definetherain’. Journal of virological methods. 202: 46–53 (2014)
Karim AA, Bhat R. Gelatin alternatives for the food industry: recent developments, challenges and prospects. Trends in Food Science & Technology. 19(12): 644–656 (2008)
Kokkoris V, Vukicevich E, Richards A, Thomsen C, Hart MM. Challenges using droplet digital PCR for environmental samples. Applied Microbiology. 1(1): 74–88 (2021)
Lee J-H, Kim M-R, Jo C-H, Jung Y-K, Kwon K, Kang TS. Specific PCR assays to determine bovine, porcine, fish and plant origin of gelatin capsules of dietary supplements. Food Chemistry. 211: 253–259 (2016)
Liu X, Feng J, Zhang Q, Guo D, Zhang L, Suo T, Hu W, Guo M, Wang X, Huang Z. Analytical comparisons of SARS-COV-2 detection by qRT-PCR and ddPCR with multiple primer/probe sets. Emerging microbes & infections. 9: 1175–1179 (2020)
Lo Y-T, Shaw P-C. DNA-based techniques for authentication of processed food and food supplements. Food Chemistry. 240: 767–774 (2018)
Lubis H, Salihah NT, Hossain MM, Ahmed MU. Development of fast and sensitive real-time qPCR assay based on a novel probe for detection of porcine DNA in food sample. LWT-food Science and Technology. 84: 686–692 (2017)
Malik A, Sutantyo ML, Hapsari I, Sinurat AV, Purwati EM, Jufri M, Suryadi H. Simultaneous identification and verification of gelatin type in capsule shells by electrophoresis and polymerase chain reaction. Journal of Pharmaceutical Investigation. 46(5): 475–485 (2016)
Mohamad NA, Mustafa S, El Sheikha AF, Khairil Mokhtar NF, Ismail A., Ali ME. Modification of gelatin–DNA interaction for optimised DNA extraction from gelatin and gelatin capsule. Journal of the Science of Food and Agriculture. 96(7): 2344–2351 (2016)
Mohamad NA., Mustafa S, Khairil Mokhtar NF, El Sheikha AF. Molecular beacon‐based real‐time PCR method for detection of porcine DNA in gelatin and gelatin capsules. Journal of the Science of Food and Agriculture. 98(12): 4570–4577 (2018)
Murugaiah C, Noor ZM., Mastakim M, Bilung LM., Selamat J, Radu S. Meat species identification and Halal authentication analysis using mitochondrial DNA. Meat science. 83(1): 57–61 (2009)
Nhari RMHR, Ismail A, Che Man YB. Analytical methods for gelatin differentiation from bovine and porcine origins and food products. Journal of food science. 77(1): R42–R46 (2012)
Park S, Rana A., Sung W, Munir M. Competitiveness of quantitative polymerase chain reaction (qPCR) and droplet digital polymerase chain reaction (ddpcr) technologies, with a particular focus on detection of antibiotic resistance genes (ARGs). Applied Microbiology. 1(3): 426–444 (2021)
Parson W, Pegoraro K, Niederstätter H, Föger M, Steinlechner M. Species identification by means of the cytochrome b gene. International journal of legal medicine. 114(1): 23–28 (2000)
Pinheiro LB, Coleman VA, Hindson CM, Herrmann J, Hindson BJ, Bhat S, Emslie KR. Evaluation of a droplet digital polymerase chain reaction format for DNA copy number quantification. Analytical Chemistry. 84(2): 1003–1011 (2012)
Rakhmanova A, Khan Z, Sharif R, Lv, X. Meeting the requirements of halal gelatin: A mini review. MOJ Food Processing and Technology. 6: 477–482 (2018)
Raurich S, Weber B, Klose V, Mohnl M, Petri D, Fibi-Smetana S. Optimisation of a droplet digital PCR for strain specific quantification of a probiotic Bifidobacterium animalis strain in poultry feed. Journal of Microbiological Methods. 163: 105646 (2019)
Reich G. Formulation and physical properties of soft capsules. Pharmaceutical Capsules, Pharmaceutical Press, London. 201–212 (2004)
Rodríguez MA., García T, González I, Asensio L, Hernandez PE, Martin R. PCR identification of beef, sheep, goat, and pork in raw and heat-treated meat mixtures. Journal of Food Protection. 67(1): 172–177 (2004)
Rohman A, Windarsih A, Erwanto Y, Zakaria Z. Review on analytical methods for analysis of porcine gelatine in food and pharmaceutical products for halal authentication. Trends in Food Science and Technology. 101: 122–132 (2020)
Rohman A, Erwanto Y, Hossain MM, Rizou M, Aldawoud TM., Galanakis CM. The application of DNA-based methods for authentication analysis: Examples in halal and kosher food products. pp. 195–213. In: Food Authentication and Traceability. Elsevier (2021)
Salihah NT, Hossain MM, Ahmed MU. A fast and sensitive real-time PCR assay to detect Legionella pneumophila with the ZEN™ double-quenched probe. Scientia Bruneiana. 17(1) (2018)
Sarbon NM, Badii F, Howell NK. Preparation and characterisation of chicken skin gelatin as an alternative to mammalian gelatin. Food hydrocolloids. 30: 143–151 (2013)
Sha X-M, Zhang L-J, Tu Z-C, Zhang L-Z, Hu Z-Z, Li Z, Li X, Huang T, Wang H, Zhang, L. The identification of three mammalian gelatins by liquid chromatography-high resolution mass spectrometry. LWT-Food Science and Technology. 89: 74–86 (2018)
Shabani H, Mehdizadeh M, Mousavi SM, Dezfouli EA, Solgi T, Khodaverdi M, Rabiei M, Rastegar H, Alebouyeh M. Halal authenticity of gelatin using species-specific PCR. Food Chemistry. 184: 203–206 (2015)
Sudjadi Wardani HS, SepminartiT, Rohman A. Analysis of porcine Gelatin DNA in a commercial capsule shell using real-time polymerase chain reaction for halal authentication. International Journal of Food Properties. 19(9): 2127–2134 (2016)
Sultana S, Hossain MM, Zaidul I, Ali ME. Multiplex PCR to discriminate bovine, porcine, and fish DNA in gelatin and confectionery products. LWT-Food Science and Technology. 92: 169–176 (2018)
Suo T, Liu X, Feng J, Guo M, Hu W, Guo D, Ullah H, Yang Y, Zhang Q, Wang X. ddPCR: a more accurate tool for SARS-CoV-2 detection in low viral load specimens. Emerging microbes & infections. 9: 1259–1268 (2020)
Tasara T, Schumacher S, Stephan R. Conventional and real-time PCR–based approaches for molecular detection and quantitation of bovine species material in edible gelatin. Journal of Food Protection. 68(11): 2420–2426 (2005)
Tukiran NA, Ismail A, Mustafa S, Hamid M. Enzyme immunoassay for the detection of porcine gelatine in edible bird’s nests. Food Additives and Contaminants: Part A. 32(7): 1023–1028 (2015)
Yang N, Chen H, Jin Z, Hou J, Zhang Y, Han H, Shen Y, Guo S. Moisture sorption and desorption properties of gelatin, HPMC and pullulan hard capsules. International journal of biological macromolecules. 159: 659–666 (2020)
Zhang W, Cui S, Cheng X-l, Wei F, Ma S. An optimized TaqMan real-time PCR method for authentication of ASINI CORII COLLA (donkey-hide gelatin). Journal of pharmaceutical and biomedical analysis. 170: 196–203 (2019)
Acknowledgements
This work was officially supported by a research grant from The Halal Science Center, Chulalongkorn University.
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PM: Experimental design, Methodology, Data collection and analysis, Manuscript preparation and revision; WD: Conceptualization, Supervision and Funding acquisition, Manuscript preparation and revision; SK: Literature review, Methodology, Manuscript preparation and revision; SS: Methodology, Data collection and analysis, Manuscript preparation and revision; WM: Data collection and analysis, Manuscript preparation and revision; VN: Contributed to experimental design, Supervision, Manuscript preparation and revision.
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Mahamad, P., Dahlan, W., Kahong, S. et al. Duplex droplet digital PCR (ddPCR) for simultaneous quantification of bovine and porcine gelatin in capsules. Food Sci Biotechnol 32, 803–811 (2023). https://doi.org/10.1007/s10068-022-01204-x
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DOI: https://doi.org/10.1007/s10068-022-01204-x