Abstract
A novel pectate lyase of a deep subseafloor bacterium, Georgenia muralis strain JAM 3H7-3 (JCM19733), was purified to homogeneity from a culture broth by an anion exchange chromatography, followed by heat treatment of the enzyme solution at 60 °C for 30 min, and a gel filtration in the presence of SDS. The purified enzyme (Pel-S2) had a molecular mass of ~51 kDa by SDS-PAGE and ~75 kDa by gel filtration. In contrast, without heat treatment, the purified enzyme in SDS sample buffer was found to consist of 23- and 23.5-kDa polypeptides by SDS-PAGE. The enzyme was gradually inactivated by heat treatment with and without SDS in parallel with a shift of polypeptides molecular masses from 23 and 23.5 to 51 kDa on SDS-PAGE. Pel-S2 degraded pectate optimally at pH 10 in a glycine buffer and temperature of 50 °C. The enzyme showed relatively broad substrate specificity toward pectic acid and pectin.
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Barras F, van Gijsegem F, Chatterjee AK (1994) Extracellular enzymes and pathogenesis of soft-rot Erwinia. Annu Rev Phytopathol 32:201–234
Boland WE, Henriksen ED, Doran-Peterson J (2010) Characterization of two Paenibacillus amylolyticus strain 27C64 pectate lyases with activity on highly methylated pectin. Appl Environ Microbiol 76:6006–6009
Fukada Y, Koide O, Miura T, Kobayashi T, Inoue A, Horikoshi K (2011) Endo-1,5-α-L-arabinanase from a subseafloor Bacillus subtilis: purification, characterization, and nucleotide sequence of its gene. J Appl Glycosci 58:61–66
Hasegawa S, Nagel CW (1966) A new pectic acid transeliminase produced extracellularly by a Bacillus. J Food Sci 31:838–845
Hassan S, Shevchik VE, Robert X, Hugouvieux-Cotte-Pattat N (2013) PelN is a new pectate lyase of Dickeya dadantii with unusual characteristics. J Bacteriol 195:2197–2206
Hoondal GS, Tiwari RP, Tewari R, Dahiya N, Beg QK (2002) Microbial alkaline pectinases and their industrial applications: a review. Appl Microbiol Biotechnol 59:409–418
Kapitany RA, Zebrowski EJ (1973) A high resolution PAS stain for polyacrylamide gel electrophoresis. Anal Biochem 56:361–369
Kobayashi T, Hatada Y, Higaki N, Lusterio DD, Ozawa T, Koike K, Kawai S, Ito S (1999a) Enzymatic properties and deduced amino acid sequence of a high-alkaline pectate lyase from an alkaliphilic Bacillus isolate. Biochim Biophys Acta 1427:145–154
Kobayashi T, Koike K, Yoshimatsu T, Higaki N, Suzumatsu A, Ozawa T, Hatada Y, Ito S (1999b) Purification and properties of a low-molecular-weight, high-alkaline pectate lyase from an alkaliphilic strain of Bacillus. Biosci Biotechnol Biochem 63:65–72
Kobayashi T, Koide O, Mori K, Shimamura S, Matsuura T, Miura T, Tkaki Y, Morono Y, Nunoura T, Imachi H, Inagaki F, Takai K, Horikoshi K (2008) Phylogenetic and enzymatic diversity of deep subseafloor aerobic microorganisms in organics- and methane-rich sediments off Shimokita Peninsula. Extremophiles 12:519–527
Kobayashi T, Koide O, Deguchi S, Horikoshi K (2011) Characterization of chitosanase of a deep biosphere Bacillus strain. Biosci Biotechnol Biochem 75:669–673
Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680–685
Margesin R, Fauster V, Fonteyne PA (2005) Characterization of cold-active pectate lyases from psychrophilic Mrakia frigida. Lett Appl Microbiol 40:453–459
Mojsov K (2012) Biotechnological applications of pectinases in textile processing and bioscouring of cotton fibers. In: proceedings of II international conference industrial engineering and environmental protection pp 314–322
Nasser W, Chalet F, Robert-Baudouy J (1990) Purification and characterization of extracellular pectate lyase from Bacillus subtilis. Biochimie 72:689–695
Sato M, Kaji A (1980) Another pectate lyase produced by Streptomyces nitrosporeus. Biosci Biotechnol Biochem 44:1345–1349
Sharma N, Rathore M, Sharma M (2013) Microbial pectinase: sources, characterization, and applications. Rev Environ Sci Biotechnol 12:45–60
Shibasaki H, Uchimura K, Miura T, Kobayashi T, Usami R, Horikoshi K (2014) Highly thermostable and surfactant-activated chitinase from a subseafloor bacterium, Laceyella putida. Appl Microbiol Biotechnol. doi:10.1007/s00253-014-5692-9
Shih J, Wei Y, Goodwin PH (2000) A comparison of the pectate lyase genes, pel-1 and pel-2, of Colletotrichum gloeosporiodes f. sp. malvae and the relationship between their expression in culture and during necrotrophic infection. Gene 243:139–150
Starr ME, Moran P (1962) Eliminative split of pectic substances by phytopathogenic soft-rot bacteria. Science 135:920–921
Truong LV, Tuyen H, Helmke E, Binh LT, Schweder T (2001) Cloning of two pectate lyase genes from the marine Antarctic bacterium Pseudoalteromonas haloplanktis strain ANT/505 and characterization of the enzymes. Extremophiles 5:35–44
Xiao Z, Bergeron H, Grosse S, Beauchemin M, Garron ML, Shaya D, Sulea T, Cygler M, Lau PCK (2008) Improvement of the thermostability and activity of a pectate lyase by single amino acid substitutions, using a strategy based on melting-temperature-guided sequence alignment. Appl Environ Microbiol 74:1183–1189
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Communicated by G. Antranikian.
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Sasaki, M., Koide, O., Kobayashi, T. et al. A pectate lyase from a deep subseafloor Georgenia muralis with unusual molecular characteristics. Extremophiles 19, 119–125 (2015). https://doi.org/10.1007/s00792-014-0691-4
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DOI: https://doi.org/10.1007/s00792-014-0691-4