Abstract
The complete genome sequence of a putative new virus isolate, provisionally named “Fagopyrum esculentum endornavirus 2” (FeEV2), is 15,706 nucleotides long with a single, large open reading frame and a typical endornavirus genome organization. FeEV2 shares 19.4%–22.1% nucleotide sequence identity with other known endornavirus genome sequences. The putative polyprotein, RNA-dependent RNA polymerase (RdRp), helicase, and glycosyltransferase (GT) share 10.6%–24.3%, 30.4%–66.1%, 16.3%–45.7%, and 10.1%–21.6% amino acid sequence identity, respectively, with the homologous sequenced proteins from known endornaviruses. This suggests that it is a member of a new, distinct species. Phylogenetic analysis of RdRp sequences places FeEV2 with other Alphaendornavirus genus members (family Endornaviridae). This is the first report of the complete genome sequence of FeEV2, which was isolated from Fagopyrum esculentum in South Korea.
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References
Petrzelova I, Kitner M, Jemelkova M, Dolezalva I (2015) First report of buckwheat downy mildew caused by Peronospora cf. ducometi in the Czech Republic. Plant Dis 99(8):1178
Adams MJ, Ldfkowitz EJ, King AMQ et al (2017) Changes to taxonomy and the international code of virus classification and nomenelature ratified by the International Committee on Taxonomy of Viruses (2017). Arch Virol 162:2505–2538
Ricardo I, Ryo O, Favio H, Rodrigo H (2018) A novel endornavirus isolated from cluster bean (Cyamopsis tetragonoloba). Arch Virol 163:2279–2282
Roossinek MJ, Sabanadzovie S, Okada R, Valverde RA (2011) The remarkable evolutionary history of endornaviruses. J Gen Virol 92:2674–2678
Igori D, Lim S, Cho HS, Kim HS, Park JM, Lee HJ, Hong KJ, Kwon SY, Moon JS (2021) Complete genome sequence of artemisia virus B, a new polerovirus infecting Artemisia princeps in South Korea. Arch Virol 166(5):1495–1499
Okada R, Kiyota E, Sabanadzovic S, Moriyama H, Fukuhara T, Saha P, Roossinck MJ, Severin A, Valverde RA (2011) Bell pepper endornavirus: molecular and biology proterties, and occurrence in the genus Capsicum. J Gen Virol 92:2664–2673
Kumar S, Stecher G, Li M, Knyaz C, Tamura K (2018) MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol 35:1547–1549
Okada R, Moriyama H, Ogawara T, Cizek H, Valverde RA (2021) Complete nucleotide sequence of an alphaendornavirus isolated from common buckwheat (Fagopyrum esculentum). Arch Virol 166:3483–3486
Lim S, Kim KH, Zhao F, Yoo RH, Igori D, Lee SH, Moon JS (2015) Complete genome sequence of a novel endornavirus isolated from hot pepper. Arch Virol 160:3153–3156
Acknowledgments
This study was supported by IPET (Korea Institute of Planning and Evaluation for Technology in Food, Agriculture, Forestry and Fisheries (project no. AGC1762111, Ministry of Agriculture, Food and Rural Affairs, Republic of Korea). We thank Sandra Cheesman, PhD, from Edanz (www.edanz.com/ac) for editing a draft of this manuscript.
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Kim, S.E., Igori, D., Kwon, SY. et al. Complete genome sequence of a putative novel alphaendornavirus isolated from Fagopyrum esculentum in South Korea. Arch Virol 167, 1361–1364 (2022). https://doi.org/10.1007/s00705-022-05408-8
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DOI: https://doi.org/10.1007/s00705-022-05408-8