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Complete genome sequences of two divergent isolates of strawberry crinkle virus coinfecting a single strawberry plant

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Abstract

Strawberry crinkle disease is one of the major diseases that threatens strawberry production. Although the biological properties of the agent, strawberry crinkle virus (SCV), have been thoroughly investigated, its complete genome sequence has never been published. Existing RT-PCR-based detection relies on a partial sequence of the L protein gene, presumably the least expressed viral gene. Here, we present complete sequences of two divergent SCV isolates co-infecting a single plant, Fragaria x ananassa cv. Čačanská raná.

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References

  1. Zeller SM, Vaughan EK (1932) Crinkle disease of strawberry. Phytopathology 22:709–713

    Google Scholar 

  2. Posthuma KI, Adams AN, Hong Y (2000) Strawberry crinkle virus, a cytorhabdovirus needing more attention from virologists. Mol Plant Pathol 1:331–336. https://doi.org/10.1046/j.1364-3703.2000.00041.x

    Article  PubMed  CAS  Google Scholar 

  3. Vaughan EK (1933) Transmission of the crinkle disease of strawberry. Phytopathology 23:738–740

    Google Scholar 

  4. Sylvester ES, Richardson J, Frazier NW (1974) Serial passage of strawberry crinkle virus in the aphid Chaetosiphon jacobi. Virology 59:301–306

    Article  PubMed  CAS  Google Scholar 

  5. Walker PJ, Blasdell KR, Calisher CH et al (2018) ICTV virus taxonomy profile: Rhabdoviridae. J Gen Virol 99:447–448. https://doi.org/10.1099/jgv.0.001020

    Article  PubMed  Google Scholar 

  6. Schoen CD, Limpens W, Moller I et al (2004) The complete genomic sequence of strawberry crinkle virus, a member of the rhabdoviridae. Acta Hortic 656:45–50

    Article  CAS  Google Scholar 

  7. Martin RR, Tzanetakis IE (2013) High risk strawberry viruses by region in the united states and canada: implications for certification, nurseries, and fruit production. Plant Dis 97:1358–1362. https://doi.org/10.1094/PDIS-09-12-0842-RE

    Article  CAS  Google Scholar 

  8. Koloniuk I, Fránová J, Sarkisova T et al (2018) Identification and molecular characterization of a novel varicosa-like virus from red clover. Arch Virol. https://doi.org/10.1007/s00705-018-3838-2

    Article  PubMed  Google Scholar 

  9. Bejerman N, Giolitti F, de Breuil S et al (2015) Complete genome sequence and integrated protein localization and interaction map for alfalfa dwarf virus, which combines properties of both cytoplasmic and nuclear plant rhabdoviruses. Virology 483:275–283. https://doi.org/10.1016/j.virol.2015.05.001

    Article  PubMed  CAS  Google Scholar 

  10. Perotto MC, Luciani C, Celli MG et al (2014) First report of Strawberry crinkle virus in Argentina. New Dis Rep 30:5. https://doi.org/10.5197/j.2044-0588.2014.030.005

    Article  Google Scholar 

  11. Klerks MM, Lindner JL, Vašková D et al (2004) Detection and tentative grouping of Strawberry crinkle virus isolates. Eur J Plant Pathol 110:45–52. https://doi.org/10.1023/B:EJPP.0000010134.06283.38

    Article  CAS  Google Scholar 

  12. Enzmann PJ, Castric J, Bovo G et al (2010) Evolution of infectious hematopoietic necrosis virus (IHNV), a fish rhabdovirus, in Europe over 20 years: implications for control. Dis Aquat Org 89:9–15. https://doi.org/10.3354/dao02182

    Article  PubMed  CAS  Google Scholar 

  13. Thompson TM, Batts WN, Faisal M et al (2011) Emergence of viral hemorrhagic septicemia virus in the North American Great Lakes region is -associated with low viral genetic diversity. Dis Aquat Org 96:29–43. https://doi.org/10.3354/dao02362

    Article  PubMed  CAS  Google Scholar 

  14. Dereeper A, Guignon V, Blanc G et al (2008) Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res 36:W465–W469. https://doi.org/10.1093/nar/gkn180

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  15. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425. https://doi.org/10.1093/oxfordjournals.molbev.a040454

    Article  PubMed  CAS  Google Scholar 

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Acknowledgements

We are kindly indebted to Alena Matyášová and Olga Baudysová for their technical assistance.

Funding

This study was funded by institutional support from RVO60077344, NAZV MZe QJ1610365 project, and the COST Action FA1407 (DIVAS), COST (European Cooperation in Science and Technology).

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Correspondence to Igor Koloniuk.

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All authors declare that they have no conflict of interest.

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This article does not contain any studies with human participants performed by any of the authors.

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Handling Editor: Ralf Georg Dietzgen.

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Koloniuk, I., Fránová, J., Sarkisova, T. et al. Complete genome sequences of two divergent isolates of strawberry crinkle virus coinfecting a single strawberry plant. Arch Virol 163, 2539–2542 (2018). https://doi.org/10.1007/s00705-018-3860-4

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  • DOI: https://doi.org/10.1007/s00705-018-3860-4

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