Skip to main content
Log in

Molecular characterization of a putative gammapartitivirus in the phytopathogenic fungus Nigrospora oryzae

  • Annotated Sequence Record
  • Published:
Archives of Virology Aims and scope Submit manuscript

Abstract

We report the molecular attributes of a novel bisegmented double-stranded RNA (dsRNA) virus, designated “Nigrospora oryzae partitivirus 1” (NoPV1), from a phytopathogenic fungus Nigrospora oryzae. The genome of NoPV1 contains two dsRNA segments (dsRNA1 and 2), 1875 bp and 1601 bp in length, respectively. dsRNA1 and -2 both have a single open reading frame encoding the RNA-dependent RNA polymerase and coat protein, respectively. NoPV1 has a high degree of sequence identity to members of genus Gammapartitivirus in the family Partitiviridae. This is the first report of a mycovirus in the family Partitiviridae that infects N. oryzae.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3

Similar content being viewed by others

References

  1. Ghabrial SA, Suzuki N (2009) Viruses of plant pathogenic fungi. Annu Rev Phytopathol 47:353–384

    Article  CAS  Google Scholar 

  2. Ghabrial SA, Castón JR, Jiang D, Nibert ML, Suzuki N (2015) 50-plus years of fungal viruses. Virology 479:356–368

    Article  Google Scholar 

  3. Xie J, Jiang D (2014) New insights into mycoviruses and exploration for the biological control of crop fungal diseases. Annu Rev Phytopathol 52:45–68

    Article  CAS  Google Scholar 

  4. Nuss DL (1992) Biological control of chestnut blight: an example of virus-mediated attenuation of fungal pathogenesis. Microbiol Rev 56:561–576

    CAS  PubMed  PubMed Central  Google Scholar 

  5. Liu L, Wang Q, Cheng J, Fu Y, Jiang D, Xie J (2015) Molecular characterization of a bipartite double-stranded RNA virus and its satellite-like RNA co-infecting the phytopathogenic fungus Sclerotinia sclerotiorum. Front Microbiol 6:406. https://doi.org/10.3389/fmicb.2015.00406

  6. Kozlakidis Z, Covelli L, Di Serio F, Citir A, Açıkgöz S, Hernandez C, Coutts RH (2006) Molecular characterization of the largest mycoviral-like double-stranded RNAs associated with Amasya cherry disease, a disease of presumed fungal aetiology. J Gen Virol 87:3113–3117

    Article  CAS  Google Scholar 

  7. Nibert ML, Ghabrial SA, Maiss E, Lesker T, Vainio EJ, Suzuki D, Jiang N (2014) Taxonomic reorganization of family Partitiviridae, and other recent progress in partitivirus research. Virus Res 188:128–141

    Article  CAS  Google Scholar 

  8. Ghabrial SA, Nibert ML, Maiss E, Baker TS, Tao YJ (2012) Partitiviridae. In: King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (eds) Virus taxonomy: classification and nomenclature of viruses: ninth report of the international committee on taxonomy of viruses. Elsevier Academic Press, San Diego, pp 523–534

    Google Scholar 

  9. Zheng L, Shi F, Kelly D, Hsiang T (2012) First report of leaf spot of Kentucky bluegrass (Poa pratensis) caused by Nigrospora oryzae in Ontario. Plant Dis 96:909

    Article  CAS  Google Scholar 

  10. Sharma P, Meena PD, Chauhan JS (2013) First report of Nigrospora oryzae (Berk. & Broome) petch causing stem blight on Brassica juncea in India. J Phytopathol 161:439–441

    Article  Google Scholar 

  11. Zhai LF, Liu J, Zhang MX, Hong N, Wang GP, Wang LP (2013) The first report of leaf spots in aloe vera caused by Nigrospora oryzae in China. Plant Dis 97:1256

    Article  CAS  Google Scholar 

  12. Wu JB, Zhang CL, Mao PP, Qian YS, Wang HZ (2014) First report of leaf spot caused by Nigrospora oryzae on Dendrobium candidum in China. Plant Dis 98:996

    Article  CAS  Google Scholar 

  13. Zhang LX, Li SS, Tan GJ, Shen JT, He T (2012) First report of Nigrospora oryzae causing leaf spot of cotton in China. Plant Dis 96:1379

    Article  CAS  Google Scholar 

  14. Zhong J, Zhou Q, Hu Y, Zhu HJ, Da Gao B (2016) Molecular identification of a novel victorivirus from the phytopathogenic fungus Nigrospora oryzae. Virus Genes 52(1):156–159

    Article  CAS  Google Scholar 

  15. Zhou Q, Zhong J, Hu Y, Da Gao B (2016) A novel nonsegmented double-stranded RNA mycovirus identified in the phytopathogenic fungus Nigrospora oryzae shows similarity to partitivirus-like viruses. Arch Virol 161(1):229–232

    Article  CAS  Google Scholar 

  16. Zhong J, Zhao SQ, Li GF, Pang XD, Deng XJ, Zhu HJ, Zhou Q (2016) A novel fusarivirus isolated from the phytopathogenic fungus Nigrospora oryzae. Virus Genes 52(6):891–895

    Article  CAS  Google Scholar 

  17. Morris TJ, Dodds JA (1979) Isolation and analysis of double stranded RNA from virus-infected plant and fungal tissue. Phytopathology 69:854–858

    Article  CAS  Google Scholar 

  18. Zhong J, Lei XH, Zhu JZ, Song G, Zhang YD, Chen Y, Gao BD (2014) Detection and sequence analysis of two novel co-infecting double-strand RNA mycoviruses in Ustilaginoidea virens. Arch Virol 159:3063–307019

    Article  CAS  Google Scholar 

  19. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402

    Article  CAS  Google Scholar 

  20. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882

    Article  CAS  Google Scholar 

  21. Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729

    Article  CAS  Google Scholar 

  22. Buck KW (1996) Comparison of the replication of positive-stranded RNA viruses of plants and animals. Adv Virus Res 47:159–251

    Article  CAS  Google Scholar 

  23. Bruenn JA (1993) A closely related group of RNA-dependent RNA polymerases from double-stranded RNA viruses. Nucleic Acids Res 21:5667–5669

    Article  CAS  Google Scholar 

  24. Thapa V, Turner GG, Hafenstein S, Overton BE, Vanderwolf KJ, Roossinck MJ (2016) Using a novel partitivirus in Pseudogymnoascus destructans to understand the epidemiology of White-nose syndrome. PLoS Pathog 12:e1006076

    Article  Google Scholar 

Download references

Acknowledgements

This study was supported by the Youth Science Foundation of Hunan Agricultural University (16QN34).

Author information

Authors and Affiliations

Authors

Corresponding authors

Correspondence to Bi Da Gao or Qian Zhou.

Ethics declarations

Funding

This study was funded by the Youth Science Foundation of Hunan Agricultural University (16QN34).

Conflict of interest

The authors declare that they have no conflict of interest.

Ethical approval

This article does not contain any studies with human participants or animals performed by any of the authors.

Additional information

Handling Editor: Robert H.A. Coutts.

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary material 1 (DOCX 20 kb)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Yu, J.X., Zhu, J.Z., Wang, Y. et al. Molecular characterization of a putative gammapartitivirus in the phytopathogenic fungus Nigrospora oryzae. Arch Virol 163, 1091–1095 (2018). https://doi.org/10.1007/s00705-017-3671-z

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00705-017-3671-z

Navigation