Skip to main content
Log in

Deleterious variant in FAM71D cause male infertility with asthenoteratospermia

  • Original Article
  • Published:
Molecular Genetics and Genomics Aims and scope Submit manuscript

Abstract

Asthenoteratospermia is a significant cause of male infertility. FAM71D (Family with sequence similarity 71, member D), as a novel protein exclusively expressed in the testis, has been found to be associated with sperm motility. However, the association of FAM71D mutation with male infertility has yet to be examined. Here, we conducted whole-exome sequencing and identified a homozygous missense mutation c.440G > A (p. Arg147Gln) of FAM71D in an asthenoteratospermia-affected man from a consanguineous family. The FAM71D variant is extremely rare in human population genome databases and predicted to be deleterious by multiple bioinformatics tools. Semen analysis indicated decreased sperm motility and obvious morphological abnormalities in sperm cells from the FAM71D-deficient man. Immunofluorescence assays revealed that the identified FAM71D mutation had an important influence on the assembly of sperm structure-related proteins. Furthermore, intra-cytoplasmic sperm injection (ICSI) treatment performed on the infertile man with FAM71D variant achieved a satisfactory outcome. Overall, our study identified FAM71D as a novel causative gene for male infertility with asthenoteratospermia, for which ICSI treatment may be suggested to acquire good prognosis. All these findings will provide effective guidance for genetic counselling and assisted reproduction treatments of asthenoteratospermia-affected subjects.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3

Similar content being viewed by others

Data availability

All the data are available within the manuscript in form of figures, tables, and supplementary files.

References

  • Auger J, Jouannet P, Eustache F (2016) Another look at human sperm morphology. Hum Reprod 31:10–23

    Article  CAS  PubMed  Google Scholar 

  • Chen S, Zhou Y, Chen Y, Gu J (2018) fastp: an ultra-fast all-in-one FASTQ preprocessor. Bioinformatics 34:i884–i890

    Article  PubMed  PubMed Central  Google Scholar 

  • Cooper TG, Noonan E, von Eckardstein S, Auger J, Baker HW, Behre HM, Haugen TB, Kruger T, Wang C, Mbizvo MT, Vogelsong KM (2010) World Health Organization reference values for human semen characteristics. Hum Reprod Update 16:231–245

    Article  PubMed  Google Scholar 

  • Dam AH, Koscinski I, Kremer JA, Moutou C, Jaeger AS, Oudakker AR, Tournaye H, Charlet N, Lagier-Tourenne C, van Bokhoven H, Viville S (2007) Homozygous mutation in SPATA16 is associated with male infertility in human globozoospermia. Am J Hum Genet 81:813–820

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Dieterich K, Soto Rifo R, Faure AK, Hennebicq S, Ben Amar B, Zahi M, Perrin J, Martinez D, Sele B, Jouk PS, Ohlmann T, Rousseaux S, Lunardi J, Ray PF (2007) Homozygous mutation of AURKC yields large-headed polyploid spermatozoa and causes male infertility. Nat Genet 39:661–665

    Article  CAS  PubMed  Google Scholar 

  • Eisenberg ML, Esteves SC, Lamb DJ, Hotaling JM, Giwercman A, Hwang K, Cheng YS (2023) Male infertility. Nat Rev Dis Primers 9:49

    Article  PubMed  Google Scholar 

  • Fagerberg L, Hallstrom BM, Oksvold P, Kampf C, Djureinovic D, Odeberg J, Habuka M, Tahmasebpoor S, Danielsson A, Edlund K, Asplund A, Sjostedt E, Lundberg E, Szigyarto CA, Skogs M, Takanen JO, Berling H, Tegel H, Mulder J, Nilsson P, Schwenk JM, Lindskog C, Danielsson F, Mardinoglu A, Sivertsson A, von Feilitzen K, Forsberg M, Zwahlen M, Olsson I, Navani S, Huss M, Nielsen J, Ponten F, Uhlen M (2014) Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics. Mol Cell Proteomics 13:397–406

    Article  CAS  PubMed  Google Scholar 

  • Fujihara Y, Satouh Y, Inoue N, Isotani A, Ikawa M, Okabe M (2012) SPACA1-deficient male mice are infertile with abnormally shaped sperm heads reminiscent of globozoospermia. Development 139:3583–3589

    Article  CAS  PubMed  Google Scholar 

  • Houston BJ, Riera-Escamilla A, Wyrwoll MJ, Salas-Huetos A, Xavier MJ, Nagirnaja L, Friedrich C, Conrad DF, Aston KI, Krausz C, Tuttelmann F, O’Bryan MK, Veltman JA, Oud MS (2021) A systematic review of the validated monogenic causes of human male infertility: 2020 update and a discussion of emerging gene-disease relationships. Hum Reprod Update 28:15–29

    Article  PubMed  PubMed Central  Google Scholar 

  • Koscinski I, Elinati E, Fossard C, Redin C, Muller J, Velez de la Calle J, Schmitt F, Ben Khelifa M, Ray PF, Kilani Z, Barratt CL, Viville S (2011) DPY19L2 deletion as a major cause of globozoospermia. Am J Hum Genet 88:344–350

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Leclerc P, Goupil S, Rioux JF, Lavoie-Ouellet C, Clark ME, Ruiz J, Saindon AA (2020) Study on the role of calmodulin in sperm function through the enrichment and identification of calmodulin-binding proteins in bovine ejaculated spermatozoa. J Cell Physiol 235:5340–5352

    Article  CAS  PubMed  Google Scholar 

  • Li H, Durbin R (2010) Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics 26:589–595

    Article  PubMed  PubMed Central  Google Scholar 

  • Li W, He X, Yang S, Liu C, Wu H, Liu W, Lv M, Tang D, Tan J, Tang S, Chen Y, Wang J, Zhang Z, Wang H, Jin L, Zhang F, Cao Y (2019) Biallelic mutations of CFAP251 cause sperm flagellar defects and human male infertility. J Hum Genet 64:49–54

    Article  CAS  PubMed  Google Scholar 

  • Li W, Wu H, Li F, Tian S, Kherraf ZE, Zhang J, Ni X, Lv M, Liu C, Tan Q, Shen Y, Amiri-Yekta A, Cazin C, Zhang J, Liu W, Zheng Y, Cheng H, Wu Y, Wang J, Gao Y, Chen Y, Zha X, Jin L, Liu M, He X, Ray PF, Cao Y, Zhang F (2020) Biallelic mutations in CFAP65 cause male infertility with multiple morphological abnormalities of the sperm flagella in humans and mice. J Med Genet 57:89–95

    Article  CAS  PubMed  Google Scholar 

  • Liu G, Shi QW, Lu GX (2010) A newly discovered mutation in PICK1 in a human with globozoospermia. Asian J Androl 12:556–560

    Article  PubMed  PubMed Central  Google Scholar 

  • Liu C, Tu C, Wang L, Wu H, Houston BJ, Mastrorosa FK, Zhang W, Shen Y, Wang J, Tian S, Meng L, Cong J, Yang S, Jiang Y, Tang S, Zeng Y, Lv M, Lin G, Li J, Saiyin H, He X, Jin L, Toure A, Ray PF, Veltman JA, Shi Q, O’Bryan MK, Cao Y, Tan YQ, Zhang F (2021) Deleterious variants in X-linked CFAP47 induce asthenoteratozoospermia and primary male infertility. Am J Hum Genet 108:309–323

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ma Q, Li Y, Luo M, Guo H, Lin S, Chen J, Du Y, Jiang Z, Gui Y (2017) The expression characteristics of FAM71D and its association with sperm motility. Hum Reprod 32:2178–2187

    Article  CAS  PubMed  Google Scholar 

  • McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, Garimella K, Altshuler D, Gabriel S, Daly M, DePristo MA (2010) The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res 20:1297–1303

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Pedersen LB, Rosenbaum JL (2008) Intraflagellar transport (IFT) role in ciliary assembly, resorption and signalling. Curr Top Dev Biol 85:23–61

    Article  CAS  PubMed  Google Scholar 

  • Povey AC, Stocks SJ (2010) Epidemiology and trends in male subfertility. Hum Fertil (camb) 13:182–188

    Article  CAS  PubMed  Google Scholar 

  • Tang S, Wang X, Li W, Yang X, Li Z, Liu W, Li C, Zhu Z, Wang L, Wang J, Zhang L, Sun X, Zhi E, Wang H, Li H, Jin L, Luo Y, Wang J, Yang S, Zhang F (2017) Biallelic mutations in CFAP43 and CFAP44 cause male infertility with multiple morphological abnormalities of the sperm flagella. Am J Hum Genet 100:854–864

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Toure A, Martinez G, Kherraf ZE, Cazin C, Beurois J, Arnoult C, Ray PF, Coutton C (2021) The genetic architecture of morphological abnormalities of the sperm tail. Hum Genet 140:21–42

    Article  CAS  PubMed  Google Scholar 

  • Wambergue C, Zouari R, Fourati Ben Mustapha S, Martinez G, Devillard F, Hennebicq S, Satre V, Brouillet S, Halouani L, Marrakchi O, Makni M, Latrous H, Kharouf M, Amblard F, Arnoult C, Ray PF, Coutton C (2016) Patients with multiple morphological abnormalities of the sperm flagella due to DNAH1 mutations have a good prognosis following intracytoplasmic sperm injection. Hum Reprod 31:1164–1172

    Article  CAS  PubMed  Google Scholar 

  • Wang K, Li M, Hakonarson H (2010) ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res 38:e164

    Article  PubMed  PubMed Central  Google Scholar 

  • Winters BR, Walsh TJ (2014) The epidemiology of male infertility. Urol Clin North Am 41:195–204

    Article  PubMed  Google Scholar 

  • Yang J, Yan R, Roy A, Xu D, Poisson J, Zhang Y (2015) The I-TASSER Suite: protein structure and function prediction. Nat Methods 12:7–8

    Article  CAS  PubMed  PubMed Central  Google Scholar 

Download references

Acknowledgements

We would like to sincerely thank the patient and his parents for their support and participation. We also thank the Center of Cryo-Electron Microscopy at Zhejiang University for technical support.

Funding

This study was supported by the National Key Research and Development Program of China (2021YFC2701400), the National Natural Science Foundation of China (31625015, 32100480, 32370654, 32200485, 82171586); the State Key Laboratory of Reproductive Medicine (SKLRM-K202002) and the China Postdoctoral Science Foundation (2020TQ0072).

Author information

Authors and Affiliations

Authors

Contributions

CL, ST and AZ designed this study and revised the Manuscript. Feng Zhang contributed to the discussion of the data. XZ and LL recruited the samples and wrote the manuscript. ST performed clinical phenotyping and the immunofluorescence analyses. LL, GZ, EZ and QC conducted the whole-exome sequencing and performed the bioinformatic analyses. All authors read and approved the final manuscript.

Corresponding authors

Correspondence to Aijun Zhang, Shuyan Tang or Chunyu Liu.

Ethics declarations

Competing interests

The authors declare that they have no conflict of interest.

Ethics approval

The study was approved by the Ethics Committee of Human Sperm Bank of Fudan University (Shanghai, China). Informed consent was obtained from all of the individuals included in this study.

Additional information

Communicated by Shuhua Xu.

Publisher's Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Supplementary Information

Below is the link to the electronic supplementary material.

Supplementary file1 (DOCX 169 KB)

Rights and permissions

Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Zhu, X., Liu, L., Tian, S. et al. Deleterious variant in FAM71D cause male infertility with asthenoteratospermia. Mol Genet Genomics 299, 35 (2024). https://doi.org/10.1007/s00438-024-02117-6

Download citation

  • Received:

  • Accepted:

  • Published:

  • DOI: https://doi.org/10.1007/s00438-024-02117-6

Keywords

Navigation