Skip to main content

Advertisement

Log in

Unclassified sclerosing malignant melanomas with AKAP9-BRAF gene fusion: a report of two cases and review of BRAF fusions in melanocytic tumors

  • Original Article
  • Published:
Virchows Archiv Aims and scope Submit manuscript

Abstract

The current classification of melanocytic tumors includes clinical, pathological, and molecular data. A subset of lesions remains difficult to classify according to these complex multilayer schemes. We report two cases of deeply infiltrating melanomas with a sclerosing background. The first case occurred on the back of a middle-aged man appearing clinically as a dermatofibroma. The architectural and cytological aspects resembled those of a desmoplastic melanoma but the strong expression of both melanA and HMB45, two stainings usually reported as negative in this entity, raised the question of an alternate diagnosis. The second case was a large, slowly growing, perivulvar tumor in a middle-aged woman. The morphology was complex with a central junctional spitzoid pattern associating an epidermal hyperplasia with large nests of large spindled melanocytes. The dermal component was made of deeply invasive strands and nests of nevoid unpigmented melanocytes surrounded by fibrosis; a perineural invasion was present at the periphery of the lesion. In both cases, aCGH found, among many other anomalies, a chromosomal breakpoint at the BRAF locus. RNA sequencing identified in both an AKAP9-BRAF gene fusion. A complementary resection was performed and no relapses have been observed in the respectively 15 and 6 months of follow-up. Both of these melanomas remained unclassified. We further review the variety of melanocytic tumors associated with such BRAF fusions.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4

Similar content being viewed by others

References

  1. Chen LL, Jaimes N, Barker CA, Busam KJ, Marghoob AA (2013) Desmoplastic melanoma: a review. J Am Acad Dermatol 68(5):825–833. https://doi.org/10.1016/j.jaad.2012.10.041

    Article  PubMed  Google Scholar 

  2. Carlson JA, Dickersin GR, Sober AJ, Barnhill RL (1995) Desmoplastic neurotropic melanoma: a clinicopathologic analysis of 28 cases. Cancer 75(2):478–494

  3. Bastian BC (2014) The molecular pathology of melanoma: an integrated taxonomy of melanocytic neoplasia. Annu Rev Pathol 9(1):239–271. https://doi.org/10.1146/annurev-pathol-012513-104658

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Kay PA, Pinheiro AD, Lohse CM, Pankratz VS, Olesen K, Lewis JE, Nascimento A (2004) Desmoplastic melanoma of the head and neck: histopathologic and immunohistochemical study of 28 cases. Int J Surg Pathol 12(1):17–24. https://doi.org/10.1177/106689690401200103

    Article  PubMed  Google Scholar 

  5. Muthusamy V, Hobbs C, Nogueira C, Cordon-Cardo C, McKee PH, Chin L, Bosenberg MW (2006) Amplification of CDK4 and MDM2 in malignant melanoma. Genes Chromosomes Cancer 45(5):447–454. https://doi.org/10.1002/gcc.20310

    Article  CAS  PubMed  Google Scholar 

  6. Shain AH, Garrido M, Botton T, Talevich E, Yeh I, Sanborn JZ, Chung J, Wang NJ, Kakavand H, Mann GJ, Thompson JF, Wiesner T, Roy R, Olshen AB, Gagnon A, Gray JW, Huh N, Hur JS, Busam KJ, Scolyer RA, Cho RJ, Murali R, Bastian BC (2015) Exome sequencing of desmoplastic melanoma identifies recurrent NFKBIE promoter mutations and diverse activating mutations in the MAPK pathway. Nat Genet 47(10):1194–1199. https://doi.org/10.1038/ng.3382

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  7. Hayward NK, Wilmott JS, Waddell N, Johansson PA, Field MA, Nones K, Patch AM, Kakavand H, Alexandrov LB, Burke H, Jakrot V, Kazakoff S, Holmes O, Leonard C, Sabarinathan R, Mularoni L, Wood S, Xu Q, Waddell N, Tembe V, Pupo GM, de Paoli-Iseppi R, Vilain RE, Shang P, Lau LMS, Dagg RA, Schramm SJ, Pritchard A, Dutton-Regester K, Newell F, Fitzgerald A, Shang CA, Grimmond SM, Pickett HA, Yang JY, Stretch JR, Behren A, Kefford RF, Hersey P, Long GV, Cebon J, Shackleton M, Spillane AJ, Saw RPM, López-Bigas N, Pearson JV, Thompson JF, Scolyer RA, Mann GJ (2017) Whole-genome landscapes of major melanoma subtypes. Nature 545(7653):175–180. https://doi.org/10.1038/nature22071

    Article  CAS  PubMed  Google Scholar 

  8. Ciampi R, Knauf JA, Kerler R, Gandhi M, Zhu Z, Nikiforova MN, Rabes HM, Fagin JA, Nikiforov YE (2005) Oncogenic AKAP9-BRAF fusion is a novel mechanism of MAPK pathway activation in thyroid cancer. J Clin Invest 115(1):94–101. https://doi.org/10.1172/JCI23237

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  9. Dessars B, De Raeve LE, El HH, Debouck CJ, Sidon PJ, Morandini R et al (2007) Chromosomal translocations as a mechanism of BRAF activation in two cases of large congenital melanocytic nevi. J Invest Dermatol 127(6):1468–1470. https://doi.org/10.1038/sj.jid.5700725

    Article  CAS  PubMed  Google Scholar 

  10. Botton T, Yeh I, Nelson T, Vemula SS, Sparatta A, Garrido MC, Allegra M, Rocchi S, Bahadoran P, McCalmont TH, LeBoit PE, Burton EA, Bollag G, Ballotti R, Bastian BC (2013) Recurrent BRAF kinase fusions in melanocytic tumors offer an opportunity for targeted therapy. Pigment Cell Melanoma Res 26(6):845–851. https://doi.org/10.1111/pcmr.12148

    Article  CAS  PubMed  Google Scholar 

  11. Wiesner T, He J, Yelensky R, Esteve-Puig R, Botton T, Yeh I et al (2014) Kinase fusions are frequent in Spitz tumours and spitzoid melanomas. Nat Commun 5:3116

    PubMed  PubMed Central  Google Scholar 

  12. Amin SM, Haugh AM, Lee CY, Zhang B, Bubley JA, Merkel EA, Verzì AE, Gerami P (2017) A comparison of morphologic and molecular features of BRAF, ALK, and NTRK1 fusion spitzoid neoplasms. Am J Surg Pathol 41(4):491–498. https://doi.org/10.1097/PAS.0000000000000761

    Article  PubMed  Google Scholar 

  13. Lee S, Barnhill RL, Dummer R, Dalton J, Wu J, Pappo A, Bahrami A (2015) TERT promoter mutations are predictive of aggressive clinical behavior in patients with spitzoid melanocytic neoplasms. Sci Rep 5(1):11200. https://doi.org/10.1038/srep11200

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  14. Busam KJ, Shah KN, Gerami P, Sitzman T, Jungbluth AA, Kinsler V (2017) Reduced H3K27me3 expression is common in nodular melanomas of childhood associated with congenital melanocytic nevi but not in proliferative nodules. Am J Surg Pathol 41(3):396–404. https://doi.org/10.1097/PAS.0000000000000769

    Article  PubMed  PubMed Central  Google Scholar 

  15. Kim HS, Jung M, Kang HN, Kim H, Park CW, Kim SM, Shin SJ, Kim SH, Kim SG, Kim EK, Yun MR, Zheng Z, Chung KY, Greenbowe J, Ali SM, Kim TM, Cho BC (2017) Oncogenic BRAF fusions in mucosal melanomas activate the MAPK pathway and are sensitive to MEK/PI3K inhibition or MEK/CDK4/6 inhibition. Oncogene 36(23):3334–3345. https://doi.org/10.1038/onc.2016.486

    Article  CAS  PubMed  Google Scholar 

  16. Turner J, Couts K, Sheren J, Saichaemchan S, Ariyawutyakorn W, Avolio I, Cabral E, Glogowska M, Amato C, Robinson S, Hintzsche J, Applegate A, Seelenfreund E, Gonzalez R, Wells K, Bagby S, Tentler J, Tan AC, Wisell J, Varella-Garcia M, Robinson W (2017) Kinase gene fusions in defined subsets of melanoma. Pigment Cell Melanoma Res 30(1):53–62. https://doi.org/10.1111/pcmr.12560

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  17. Palanisamy N, Ateeq B, Kalyana-Sundaram S, Pflueger D, Ramnarayanan K, Shankar S, Han B, Cao Q, Cao X, Suleman K, Kumar-Sinha C, Dhanasekaran SM, Chen Y, Esgueva R, Banerjee S, LaFargue CJ, Siddiqui J, Demichelis F, Moeller P, Bismar TA, Kuefer R, Fullen DR, Johnson TM, Greenson JK, Giordano TJ, Tan P, Tomlins SA, Varambally S, Rubin MA, Maher CA, Chinnaiyan AM (2010) Rearrangements of the RAF kinase pathway in prostate cancer, gastric cancer and melanoma. Nat Med 16(7):793–798. https://doi.org/10.1038/nm.2166

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  18. Ross JS, Wang K, Chmielecki J, Gay L, Johnson A, Chudnovsky J, Yelensky R, Lipson D, Ali SM, Elvin JA, Vergilio JA, Roels S, Miller VA, Nakamura BN, Gray A, Wong MK, Stephens PJ (2016) The distribution of BRAF gene fusions in solid tumors and response to targeted therapy. Int J Cancer 138(4):881–890. https://doi.org/10.1002/ijc.29825

    Article  CAS  PubMed  Google Scholar 

  19. Menzies AM, Yeh I, Botton T, Bastian BC, Scolyer RA, Long GV (2015) Clinical activity of the MEK inhibitor trametinib in metastatic melanoma containing BRAF kinase fusion. Pigment Cell Melanoma Res 28(5):607–610. https://doi.org/10.1111/pcmr.12388

    Article  PubMed  PubMed Central  Google Scholar 

  20. Hutchinson KE, Lipson D, Stephens PJ, Otto G, Lehmann BD, Lyle PL, Vnencak-Jones CL, Ross JS, Pietenpol JA, Sosman JA, Puzanov I, Miller VA, Pao W (2013) BRAF fusions define a distinct molecular subset of melanomas with potential sensitivity to MEK inhibition. Clin Cancer Res 19(24):6696–6702. https://doi.org/10.1158/1078-0432.CCR-13-1746

    Article  CAS  PubMed  Google Scholar 

  21. Stransky N, Cerami E, Schalm S, Kim JL, Lengauer C (2014) The landscape of kinase fusions in cancer. Nat Commun 5:4846. https://doi.org/10.1038/ncomms5846

    Article  CAS  PubMed  PubMed Central  Google Scholar 

Download references

Acknowledgements

Dr. Emilie Perron gratefully acknowledges the “Bourse McLaughlin du doyen de la Faculté de médecine de l’Université Laval” and the TEVA Innovation Canada fellowship grants.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Emilie Perron.

Ethics declarations

The study was conducted according to the Declaration of Helsinki and has been approved by the research ethics committee of the Centre Léon Bérard (Ref: L17-70).

Conflict of interest

The authors declare that they have no conflict of interest.

Additional information

Virchows Archiv conforms to the ICMJE recommendation for qualification of authorship. The ICMJE recommends that authorship be based on the following 4 criteria:

• Substantial contributions to the conception or design of the work or the acquisition, analysis, or interpretation of data for the work

• Drafting the work or revising it critically for important intellectual content

• Final approval of the version to be published

• Agreement to be accountable for all aspects of the work in ensuring that questions related to the accuracy or integrity of any part of the work are appropriately investigated and resolved

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Perron, E., Pissaloux, D., Neub, A. et al. Unclassified sclerosing malignant melanomas with AKAP9-BRAF gene fusion: a report of two cases and review of BRAF fusions in melanocytic tumors. Virchows Arch 472, 469–476 (2018). https://doi.org/10.1007/s00428-017-2290-0

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00428-017-2290-0

Keywords

Navigation