Abstract
Key message
VyPUB21 plays a key role during the defense against powdery mildew in grapes.
Abstract
Ubiquitin-ligating enzyme (E3), a type of protein widely found in plants, plays a key role in their resistance to disease. Yet how E3 participates in the disease-resistant response of Chinese wild grapevine (Vitis yeshanensis) remains unclear. Here we isolated and identified a U-box type E3 ubiquitin ligase, VyPUB21, from V. yeshanensis. This gene’s expression level rose rapidly after induction by exogenous salicylic acid (SA), jasmonic acid (JA), and ethylene (ETH) and powdery mildew. In vitro ubiquitination assay results revealed VyPUB21 could produce ubiquitination bands after co-incubation with ubiquitin, ubiquitin-activating enzyme (E1), and ubiquitin-conjugating enzyme (E2); further, mutation of the conserved amino acid site in the U-box can inhibit the ubiquitination. Transgenic VyPUB21 Arabidopsis had low susceptibility to powdery mildew, and significantly fewer conidiophores and spores on its leaves. Expression levels of disease resistance-related genes were also augmented in transgenic Arabidopsis, and its SA concentration also significantly increased. VyPUB21 interacts with VyNIMIN and targets VyNIMIN protein hydrolysis through the 26S proteasome system. Thus, the repressive effect of the NIMIN–NPR complex on the late systemic acquired resistance (SAR) gene was attenuated, resulting in enhanced resistance to powdery mildew. These results indicate that VyPUB21 encoding ubiquitin ligase U-box E3 activates the SA signaling pathway, and VyPUB21 promotes the expression of late SAR gene by degrading the important protein VyNIMIN of SA signaling pathway, thus enhancing grape resistance to powdery mildew.
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The datasets generated during the current study are available from the corresponding author on request.
References
Bavaresco L (2019) Impact of grapevine breeding for disease resistance on the global wine industry. Acta Hortic 1248:7–14. https://doi.org/10.17660/ActaHortic.2019.1248.2
Chisholm ST, Coaker G, Day B, Staskawicz BJ (2006) Host-microbe interactions: shaping the evolution of the plant immune response. Cell 124(4):803–814. https://doi.org/10.1016/j.cell.2006.02.008
Clough SJ, Bent AF (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 16(6):735–743. https://doi.org/10.1046/j.1365-313x.1998.00343.x
de Wit PJGM (2007) How plants recognize pathogens and defend themselves. Cell Mol Life Sci 64:2726–2732. https://doi.org/10.1007/s00018-007-7284-7
Du Z, Zhou X, Li L, Su Z (2009) plantsUPS: a database of plants’ ubiquitin proteasome system. BMC Genomics 10:227. https://doi.org/10.1186/1471-2164-10-227
Gaona MR, van Tuinen A, Schipper D, Kano A, Wolters PJ, Visser RG, van Kan JA, Wolters AMA, Bai Y (2023) Mutation of PUB17 in tomato leads to reduced susceptibility to necrotrophic fungi. Plant Biotechnol J 21(11):2157. https://doi.org/10.1111/pbi.14127
González-Lamothe R, Tsitsigiannis DI, Ludwig AA, Panicot M, Shirasu K, Jones JD (2006) The U-box protein CMPG1 is required for efficient activation of defense mechanisms triggered by multiple resistance genes in tobacco and tomato. Plant Cell 18(4):1067–1083. https://doi.org/10.1105/tpc.106.040998
Hartmann-Petersen R, Seeger M, Gordon C (2003) Transferring substrates to the 26S proteasome. Trends Biochem Sci 28(1):26–31. https://doi.org/10.1016/S0968-0004(02)00002-6
He Q, McLellan H, Boevink PC, Sadanandom A, Xie C, Birch PR, Tian Z (2015) U-box E3 ubiquitin ligase PUB17 acts in the nucleus to promote specific immune pathways triggered by Phytophthora infestans. J Exp Bot 66(11):3189–3199. https://doi.org/10.1093/jxb/erv128
Herrmann J, Lerman LO, Lerman A (2007) Ubiquitin and ubiquitin-like proteins in protein regulation. Circ Res 100(9):1276–1291. https://doi.org/10.1161/01.RES.0000264500.11888.f0
Hermann M, Maier F, Masroor A, Hirth S, Pfitzner AJP, Pfitzner UM (2013) The Arabidopsis NIMIN proteins affect NPR1 differentially. Front Plant Sci 4:88. https://doi.org/10.3389/fpls.2013.00088
Jiao L, Zhang Y, Lu J (2017) Overexpression of a stress-responsive U-box protein gene VaPUB affects the accumulation of resistance related proteins in Vitis vinifera ‘Thompson seedless.’ Plant Physiol Biochem 112:53–63. https://doi.org/10.1016/j.plaphy.2016.12.019
Jones JDG, Dangl JL (2001) Plant pathogens and integrated defence responses to infection. Nature 411(6839):826–833. https://doi.org/10.1038/35081161
Jones JDG, Dangl JL (2006) The plant immune system. Nature 444(7117):323–329. https://doi.org/10.1038/nature05286
Kappo MA, Eiso AB, Hassem F, Atkinson RA, Faro A, Muleya V, Mulaudzi T, Poole JO, McKenzie JM, Chibi M, Moolman-Smook JC, Rees DJG, Pugh DJR (2012) Solution structure of RING finger-like domain of retinoblastoma-binding protein-6 (RBBP6) suggests it functions as a U-box. J Biol Chem 287(10):7146–7158. https://doi.org/10.1074/jbc.M110.217059
Lee J, Kim WT (2011) Regulation of abiotic stress signal transduction by E3 ubiquitin ligases in Arabidopsis. Mol Cells 31:201–208. https://doi.org/10.1007/s10059-011-0031-9
Li W, Ahn I, Ning Y, Park C, Zeng L, Whitehill JGA, Lu H, Zhao Q, Ding B, Xie Q, Zhou J, Dai L, Wang G (2012) The U-box/ARM E3 ligase PUB13 regulates cell death, defense, and flowering time in Arabidopsis. Plant Physiol 159(1):239–250. https://doi.org/10.1104/pp.111.192617
Li X, Zhu L, Wu Z, Chen J, Wang T, Zhang X, Mei G, Wang J, Lv G (2022) Classification and expression profile of the U-box E3 ubiquitin ligase enzyme gene family in maize (Zea mays L.). Plants (basel) 11(19):2459. https://doi.org/10.3390/plants11192459
Liu Y, Wu Y, Huang X, Sun J, Xie Q (2011) AtPUB19, a U-box E3 ubiquitin ligase, negatively regulates abscisic acid and drought responses in Arabidopsis thaliana. Mol Plant 4(6):938–946. https://doi.org/10.1093/mp/ssr030
Liu GT, Jiang JF, Liu XN, Jiang JZ, Sun L, Duan W, Li RM, Wang Y, Lecourieux D, Liu CH, Li SH, Wang LJ (2019) New insights into the heat responses of grape leaves via combined phosphoproteomic and acetylproteomic analyses. Hortic Res 6:100. https://doi.org/10.1038/s41438-019-0183-x
Maier F, Zwicker S, Hückelhoven A, Meissner M, Funk J, Pfitzner AJP, Pfitzner UM (2011) NONEXPRESSOR OF PATHOGENESIS-RELATED PROTEINS1 (NPR1) and some NPR1-related proteins are sensitive to salicylic acid. Mol Plant Pathol 12(1):73–91. https://doi.org/10.1111/j.1364-3703.2010.00653.x
Mazzucotelli E, Belloni S, Marone D, De Leonardis A, Guerra D, Di Fonzo N, Cattivelli L, Mastrangelo A (2006) The E3 ubiquitin ligase gene family in plants: regulation by degradation. Curr Genomics 7(8):509–522. https://doi.org/10.2174/138920206779315728
Miao M, Niu X, Kud J, Du X, Avila J, Devarenne TP, Kuhl JC, Liu Y, Xiao F (2016) The ubiquitin ligase SEVEN IN ABSENTIA (SINA) ubiquitinates a defense-related NAC transcription factor and is involved in defense signaling. New Phytol 211(1):138–148. https://doi.org/10.1111/nph.13890
Min HJ, Jung YJ, Kang BG, Kim WT (2016) CaPUB1, a hot pepper U-box E3 ubiquitin ligase, confers enhanced cold stress tolerance and decreased drought stress tolerance in transgenic rice (Oryza sativa L.). Mol Cells 39(3):250. https://doi.org/10.14348/molcells.2016.2290
Morreale FE, Walden H (2016) Types of ubiquitin ligases. Cell 165(1):248. https://doi.org/10.1016/j.cell.2016.03.003
Mudgil Y, Shiu S, Stone SL, Salt JN, Goring DR (2004) A large complement of the predicted Arabidopsis ARM repeat proteins are members of the U-box E3 ubiquitin ligase family. Plant Physiol 134(1):59–66. https://doi.org/10.1104/pp.103.029553
Nawrath C, Metraux JP (1999) Salicylic acid induction-deficient mutants of Arabidopsis express PR-2 and PR-5 and accumulate high levels of camalexin after pathogen inoculation. Plant Cell 11(8):1393–1404. https://doi.org/10.1105/tpc.11.8.1393
Pickart CM, Eddins MJ (2004) Ubiquitin: structures, functions, mechanisms. Biochim Biophys Acta 1695(1–3):55–72. https://doi.org/10.1016/j.bbamcr.2004.09.019
Schulman BA, Wade Harper J (2009) Ubiquitin-like protein activation by E1 enzymes: the apex for downstream signalling pathways. Nat Rev Mol Cell Biol 10(5):319–331. https://doi.org/10.1038/nrm2673
Shang J, Xi D, Xu F, Wang S, Cao S, Xu M, Zhao P, Wang J, Jia S, Zhang Z (2011) A broad-spectrum, efficient and nontransgenic approach to control plant viruses by application of salicylic acid and jasmonic acid. Planta 233:299–308. https://doi.org/10.1007/s00425-010-1308-5
Shang S, Liu G, Zhang S, Liang X, Zhang R, Sun G (2023) A fungal CFEM-containing effector targets NPR1 regulator NIMIN2 to suppress plant immunity. Plant Biotechnol J 22(1):82–97. https://doi.org/10.1111/pbi.14166
Shirsekar G, Dai L, Hu Y, Wang X, Zeng L, Wang G (2010) Role of ubiquitination in plant innate immunity and pathogen virulence. J Plant Biol 53(1):10–18. https://doi.org/10.1007/s12374-009-9087-x
Stam R, Mantelin S, McLellan H, Thilliez GT (2014) The role of effectors in nonhost resistance to filamentous plant pathogens. Front Plant Sci 5:582. https://doi.org/10.3389/fpls.2014.00582
Toth Z, Winterhagen P, Kalapos B, Su Y, Kovacs L, Kiss E (2016) Expression of a grapevine NAC transcription factor gene is induced in response to powdery mildew colonization in salicylic acid-independent manner. Sci Rep 6(1):30825. https://doi.org/10.1038/srep30825
Vierstra RD (2009) The ubiquitin–26S proteasome system at the nexus of plant biology. Nat Rev Mol Cell Biol 10(6):385–397. https://doi.org/10.1038/nrm2688
Wang D (2005) Induction of protein secretory pathway is required for systemic acquired resistance. Science 308(5724):1036–1040. https://doi.org/10.1126/science.1108791
Wang J, Qu B, Dou S, Li L, Yin D, Pang Z, Zhou Z, Tian M, Liu G, Xie Q (2015) The E3 ligase OsPUB15 interacts with the receptor-like kinase PID2 and regulates plant cell death and innate immunity. BMC Plant Biol 15(1):1–15. https://doi.org/10.1186/s12870-015-0442-4
Yeqing C, Jun L, Weinan W, Chunguo F, Guozhen Y, Jingjing S, Jinyi L, Changquan W (2023) Rose long non-coding RNA lncWD83 promotes flowering by modulating ubiquitination of the floral repressor RcMYC2L. Plant Physiol 193(4):2573–2591
Yıldırım Z, Atak A, Akkurt M (2019) Determination of downy and powdery mildew resistance of some Vitis spp. Ciência Téc Vitiv 34(1):15–24. https://doi.org/10.1051/ctv/20193401015
Yu Y, Xu W, Wang S, Xu Y, Li H, Wang Y, Li S (2011) VpRFP1, a novel C4C4-type RING finger protein gene from Chinese wild Vitis pseudoreticulata, functions as a transcriptional activator in defence response of grapevine. J Exp Bot 62(15):5671–5682. https://doi.org/10.1093/jxb/err253
Yu YH, Li XZ, Guo DL, Zhang HL, Li GR, Li XQ, Zhang GH (2016) Genome-wide identification and analysis of the U-box family of E3 ligases in grapevine. Russ J Plant Physiol 63(6):835–848
Yu Y, Bian L, Wan Y, Jiao Z, Yu K, Zhang G, Guo D (2019a) Grape (Vitis vinifera) VvDOF3 functions as a transcription activator and enhances powdery mildew resistance. Plant Physiol Biochem 143:183–189. https://doi.org/10.1016/j.plaphy.2019.09.010
Yu Y, Wan Y, Jiao Z, Bian L, Yu K, Zhang G, Guo D (2019b) Functional characterization of resistance to powdery mildew of VvTIFY9 from Vitis vinifera. Int J Mol Sci 20(17):4286. https://doi.org/10.3390/ijms20174286
Yu Y, Bian L, Yu K, Yang S, Zhang G, Guo D (2020a) Grape (Vitis davidii) VdGATA2 functions as a transcription activator and enhances powdery mildew resistance via the active oxygen species pathway. Sci Hortic 267:109327. https://doi.org/10.1016/j.scienta.2020.109327
Yu Y, Meng X, Guo D, Yang S, Zhang G, Liang Z (2020b) Grapevine U-box E3 ubiquitin ligase VlPUB38 negatively regulates fruit ripening by facilitating abscisic-aldehyde oxidase degradation. Plant Cell Physiol 61(12):2043–2054. https://doi.org/10.1093/pcp/pcaa118
Zhang Y, Xu S, Ding P, Wang D, Cheng YT, He J, Gao M, Xu F, Li Y, Zhu Z, Li X, Zhang Y (2010) Control of salicylic acid synthesis and systemic acquired resistance by two members of a plant-specific family of transcription factors. Proc Natl Acad Sci U S A 107(42):18220–18225. https://doi.org/10.1073/pnas.1005225107
Zhang Y, Lubberstedt T, Xu M (2013) The genetic and molecular basis of plant resistance to pathogens. J Genet Genomics 40(1):23–35. https://doi.org/10.1016/j.jgg.2012.11.003
Funding
This work was supported by National Natural Science Foundation of China (Grant no. 32072517), Program for Science & Technology Innovation Talents in Universities of Henan Province (21HASTIT035), Top Young Talents in Central Plains (No. Yuzutong (2021)44), Luoyang City Science and Technology Planning Project (2101102A).
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YY conceived and designed the experiments. LW, AZ, XP, YS, and ML conducted the experiments. LW and XL performed data analysis, interpretation, and investigation. LW and LB wrote the manuscript. YY and QS revised the original manuscript. All authors have read and approved the final manuscript.
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Wang, L., Bian, L., Shi, Q. et al. The Vitis yeshanensis U-box E3 ubiquitin ligase VyPUB21 enhances resistance to powdery mildew by targeting degradation of NIM1-interacting (NIMIN) protein. Plant Cell Rep 43, 93 (2024). https://doi.org/10.1007/s00299-024-03180-4
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DOI: https://doi.org/10.1007/s00299-024-03180-4