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Taishania pollutisoli gen. nov., sp. nov., Isolated from Tetrabromobisphenol A-Contaminated Soil

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Abstract

Strain CZZ-1T was isolated from long-term TBBPA-contaminated soil Zaozhuang city, Shandong province, People’s Republic of China. CZZ-1T was pink-pigmented, Gram-stain-negative, rod-shaped, non-motile and aerobic. The 16S rRNA gene analysis indicated that strain CZZ-1T shows high similarities to Fluviicola taffensis DSM 16823T (92.6%) and Fluviicola hefeinensis KACC 16597T (92.5%) and less than 91% sequence similarities to other genus or species in the family Crocinitomicaceae. It was able to grow at 10–37 °C, with 0–6% (w/v) NaCl. It could hydrolyze gelatin, but could not reduce nitrates to nitrites. The predominant fatty acids of strain CZZ-1T were iso-C15:0 (51.3%), C15:0 2-OH (11.0%), iso-C17:0 3-OH (8.0%), C14: 0 (7.0%), iso-C15:1 G (6.8%) and Summed Feature 3 (C16:1 ω7c and/or C16:1 ω6c, 4.4%). The polar lipid profile was composed of five unidentified lipids, two unidentified phospholipids, one phosphatidylethanolamine, one unidentified aminolipid and one unidentified glycolipid. The predominant respiratory quinone was MK-6. The genomic DNA G+C content of strain CZZ-1T was 41.5 mol%. Based on data from phenotypic, chemotaxonomic and genotypic analysis in this study, strain CZZ-1T represents a novel species in a new genus in the family Crocinitomicaceae, for which the name Taishania pollutisoli gen. nov., sp. nov. is proposed. The type strain is CZZ-1T (= KCTC 52343T = GDMCC 1.2270T).

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References

  1. Munoz R, Rosselló-Móra R, Amann R (2016) Revised phylogeny of Bacteroidetes and proposal of sixteen new taxa and two new combinations including Rhodothermaeota phyl. nov. Syst Appl Microbiol 39:281–296

    Article  PubMed  Google Scholar 

  2. Oren A, Garrity GM (2016) List of new names and new combinations previously effectively, but not validly, published. Int J Syst Evol Microbiol 66:2463–2466

    Article  PubMed  Google Scholar 

  3. Wang XJ, Xu L, Wang N, Sun HM, Chen LX, Zhang YZ, Shi M, Zhang XY (2020) Putridiphycobacter roseus gen. nov. sp. nov. isolated from antarctic rotten seaweed. Int J Syst Evol Microbiol 70:648–655

    Article  CAS  PubMed  Google Scholar 

  4. Bowman JP, Nichols CM, Gibson JAE (2003) Algoriphagus ratkowskyi gen. nov., sp. nov., Brumimicrobium glaciale gen. nov., sp. nov., Cryomorpha ignava gen. nov., sp. nov. and Crocinitomix catalasitica gen. nov., sp. nov., novel flavobacteria isolated from various polar habitats. Int J Syst Evol Microbiol 53:1343–1355

    Article  CAS  PubMed  Google Scholar 

  5. O’Sullivan LA, Rinna J, Humphreys G, Weightman AJ, Fry JC (2005) Fluviicola taffensis gen. nov., sp. nov., a novel freshwater bacterium of the family Cryomorphaceae in the phylum “Bacteroidetes.” Int J Syst Evol Microbio 55:2189–2194

    Article  CAS  Google Scholar 

  6. Lau KWK, Ren J, Wai NLM, Qian PY, Wong PK, Wu M (2006) Lishizhenia caseinilytica gen. nov., sp. nov., a marine bacterium of the phylum Bacteroidetes. Int J Syst Evol Microbiol 56:2317–2322

    Article  CAS  PubMed  Google Scholar 

  7. Muramatsu Y, Takahashi M, Kamakura Y, Suzuki KI, Nakagawa Y (2012) Salinirepens amamiensis gen. nov., sp. nov., a member of the family Cryomorphaceae isolated from seawater, and emended descriptions of the genera Fluviicola and Wandonia. Int J Syst Evol Microbiol 62:2235–2240

    Article  CAS  PubMed  Google Scholar 

  8. Lee DH, Choi EK, Moon SR, Ahn S, Lee YS, Ahn S, Lee YS, Jung JS, Che OJ, Whang KS, Kahng HY (2010) Wandonia haliotis gen. nov., sp. nov., a marine bacterium of the family Cryomorphaceae, phylum Bacteroidetes. Int J Syst Evol Microbiol 60:510–514

    Article  CAS  PubMed  Google Scholar 

  9. Li R, Zheng JW, Wang R, Song Y, Chen Q, Yang X, Li SP, Jiang JD (2010) Biochemical degradation pathway of dimethoate by Paracoccus sp. Lgjj-3 isolated from treatment wastewater. Biodeter Biode 64:51–57

    Article  CAS  Google Scholar 

  10. Buck JD (1982) Nonstaining (KOH) method for determination of gram reactions of marine bacteria. Appl Environ Microbiol 44:992–993

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  11. Bernardet JF, Nakagawa Y, Holmes B (2002) Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52:1049–1070

    CAS  PubMed  Google Scholar 

  12. Mccarthy AJ, Cross T (1984) A taxonomic study of Thermomonospora and other monosporic Actinomycetes. Microbiol-SGM 130:5–25

    Article  Google Scholar 

  13. Lane DJ (1991) 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M (eds) Nucleic acid techniques in bacterial systematic. Wiley, New York, pp 115–175

  14. Kim OS, Cho YJ, Lee K, Yoon SH, Kim M, Na H, Park SC, Jeon YS, Lee JH, Yi H, Won S, Chun J (2012) Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62:716–772

    Article  CAS  PubMed  Google Scholar 

  15. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  16. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425

    CAS  PubMed  Google Scholar 

  17. Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368–376

    Article  CAS  PubMed  Google Scholar 

  18. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using Maximum Likelihood, evolutionary Distance, and Maximum Parsimony Methods. Mol Biol Evo 28:2731–2739

    Article  CAS  Google Scholar 

  19. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791

    Article  PubMed  Google Scholar 

  20. Meier-Kolthoff JP, Auch AF, Klenk HP, Göker M (2013) Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinform 14:60

    Article  Google Scholar 

  21. Goris J, Konstantinidis KT, Klappenbach JA, Coenye T, Vandamme P, Tiedje JM (2007) DNA–DNA hybridization values and their relationship to whole-genome sequence similarities. Int J Syst Evol Microbiol 57:81–91

    Article  CAS  PubMed  Google Scholar 

  22. Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids. MIDI Technical Note 101. MIDI Inc., Newark, DE, USA

  23. Collins MD, Pirouz T, Goodfellow M, Minnikin DE (1977) Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100:221–230

    Article  CAS  PubMed  Google Scholar 

  24. Tindall BJ (1990) A comparative study of the lipid composition of Halobacterium saccharovorum from various sources. Syst Appl Microbiol 13:128–130

    Article  CAS  Google Scholar 

  25. Tindall BJ (1990) Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Letts 66:199–202

    Article  CAS  Google Scholar 

  26. Richter M, Rosselló-Móra R (2009) Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci USA 106:19126–19131

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  27. Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O, Krichevsky MI, Moore LH, Moore WEC, Murray RGE, Stackebrandt E, Starr MP, Trüper HG (1987) Report of the ad hoc Committee on reconciliation of approaches to bacterial systematics. Int J Syst Evol Microbiol 37:463–464

    Article  Google Scholar 

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Acknowledgements

This work was funded by grants from Shandong Provincial University Youth Innovation and Technology Program, China (2020KJE008 and 2019KJE020) and the National natural science foundation of China (31600080); the Science and Technology Development Program of Zaozhuang (2020NS09).

Funding

This work was funded by grants from Shandong Provincial University Youth Innovation and Technology Program, China (2020KJE008 and 2019KJE020) and the National natural science foundation of China (31600080); the Science and Technology Development Program of Zaozhuang (2020NS09).

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Material preparation, data collection and analysis were performed by ML and TY, Material preparation and data collection were performed by LL; data collection and analysis were performed by HW. QC contributed to original draft preparation ; QC and KC contributed to review and editing. All authors read and approved the final manuscript.

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Correspondence to Qing Chen or Kai Chen.

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Lan, M., Yang, T., Song, Y. et al. Taishania pollutisoli gen. nov., sp. nov., Isolated from Tetrabromobisphenol A-Contaminated Soil. Curr Microbiol 78, 2563–2568 (2021). https://doi.org/10.1007/s00284-021-02522-9

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  • DOI: https://doi.org/10.1007/s00284-021-02522-9

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