Abstract
Cardiovascular complications due to thrombosis have become one of the main causes of death worldwide. The high cost and undesirable side effects of existing thrombolytic agents have led researchers to isolate potential strains that produce fibrinolytic enzymes for therapeutic applications. Fibrinolytic enzymes, especially of microbial origin, are recognized as potential therapeutic candidates for thrombosis. In this study, isolation, identification, and optimization of fibrinolytic protease enzyme-producing strains were performed using fermentative protein sources. Fibrinolytic protease-producing strains were selected by analyzing the isolated strains on skim milk agar medium. The selected strains were examined on blood agar and fibrin plate medium, and the ones showing high enzymatic activity were determined. The strain determined to have the highest activity was identified as Acinetobacter johnsonii TR01 by 16S rRNA analysis. The maximum fibrinolytic protease production of the strain occurred at 60 °C and pH 7.0. Under different medium conditions used for enzyme production, fructose was found to be the best carbon source, while yeast extract and peptone were the best nitrogen sources. It was observed that CaCl2, KH2PO4, and MgSO4 components had a negative effect, while MnCl2 and ZnC4H6O4 components had a positive effect on enzyme production. The medium composition for maximum enzyme activity (8.30 IU/ml) determined by Response Surface Methodology was 14.22 g/L fructose, 11.190 g/L yeast extract, 14.22 g/L peptone, 0.5 g/L MnCl2, and 0.5 g/L ZnC4H6O4.
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References
Al Farraj DA, Kumar TSJ, Vijayaraghavan P, Elshikh MS, Alkufeidy RM, Alkubaisi NA, Alshammari MK (2020) Enhanced production, purification and biochemical characterization of therapeutic potential fibrinolytic enzyme from a new Bacillus flexus from marine environment. J King Saud Univ Sci 32(7):3174–3180. https://doi.org/10.1016/j.jksus.2020.09.004
Al-Asadi O, Almusarhed M, Eldeeb H (2019) Predictive risk factors of venous thromboembolism (VTE) associated with peripherally inserted central catheters (PICC) in ambulant solid cancer patients: retrospective single Centre cohort study. Thromb J 17(1):1–7. https://doi.org/10.1186/s12959-019-0191-y
Amid A, Sulaiman S, Jimat DN, Azmin NFM (2018) Multifaceted protocol in biotechnology. Springer, Singapore
Anusree M, Swapna K, Aguilar CN, Sabu A (2020) Optimization of process parameters for the enhanced production of fibrinolytic enzyme by a newly isolated marine bacterium. Bioresour Technol Rep 11:100436. https://doi.org/10.1016/j.biteb.2020.100436
Bajaj BK, Sharma N, Singh S (2013) Enhanced production of fibrinolytic protease from Bacillus cereus NS-2 using cotton seed cake as nitrogen source. Biocatal Agric Biotechnol 2(3):204–209. https://doi.org/10.1016/j.bcab.2013.04.003
Basic Local Alignment Search Tool (BLAST) (2022) https://blast.ncbi.nlm.nih.gov/Blast.cgi. Accessed 07 September 2022.
Benjamin EJ, Virani SS, Callaway CW, Chamberlain AM, Chang AR, Cheng S, Chiuve SE, Cushman M, Delling FN, Deo R et al (2018) Heartdisease and stroke statistics-2018 update: a report from the American Heart Association. Circulation 137:67
Burhan A, Nisa U, Gökhan C, Ömer C, Ashabil A, Osman G (2003) Enzymatic properties of a novel thermostable, thermophilic, alkaline and chelator resistant amylase from an alkaliphilic Bacillus sp. isolate ANT-6. Process Biochem 38(10):1397–1403. https://doi.org/10.1016/S0032-9592(03)00037-2
Chimbekujwo KI, Ja’afaru MI, Adeyemo OM (2020) Purification, characterization and optimization conditions of protease produced by Aspergillus brasiliensis strain BCW2. Sci Afric 8:00398. https://doi.org/10.1016/j.sciaf.2020.e00398
Contesini FJ, Melo RRD, Sato HH (2018) An overview of Bacillus proteases: from production to application. Crit Rev Biotechnol 38(3):321–334.https://doi.org/10.1080/07388551.2017.1354354
Danilova I, Sharipova M (2020) The practical potential of bacilli and their enzymes for industrial production. Front Microbiol 11:1782. https://doi.org/10.3389/fmicb.2020.01782
Dhamodharan D (2019) Novel fibrinolytic protease producing Streptomyces radiopugnans VITSD8 from marine sponges. Mar Drugs 17(3):164. https://doi.org/10.3390/md17030164
dos Santos Aguilar JG, Sato HH (2018) Microbial proteases: production and application in obtaining protein hydrolysates. Food Res Int 103:253–262. https://doi.org/10.1016/j.foodres.2017.10.044
Gopalakrishnan D, Jain A (2021) A statistical and downstream approach for the improvement of protease production from Bacıllus toyonensıs Vkb5 ısolated from Actınıdıa delıcıosa. J Microbiol Biotechnol Food Sci. https://doi.org/10.15414/jmbfs.3721
Gurumallesh P, Alagu K, Ramakrishnan B, Muthusamy S (2019) A systematic reconsideration on proteases. Int J Biol Macromol 128:254–267. https://doi.org/10.1016/j.ijbiomac.2019.01.081
Hashmi S, Iqbal S, Ahmed I, Janjua HA (2022) Production, optimization, and partial purification of alkali-thermotolerant proteases from newly isolated Bacillus subtilis S1 and Bacillus amyloliquefaciens KSM12. Processes 10(6):1050. https://doi.org/10.3390/pr10061050
Hu Y, Yu D, Wang Z, Hou J, Tyagi R, Liang Y, Hu Y (2019) Purification and characterization of a novel, highly potent fibrinolytic enzyme from Bacillus subtilis DC27 screened from Douchi, a traditional Chinese fermented soybean food. Sci Rep 9(1):1–10. https://doi.org/10.1038/s41598-019-45686-y
Jasim B, Ali E (2021) Enhanced production of fibrinolytic enzyme from Pseudomonas aeruginosa by optimization media components. J Appl Sci Nanotechnol 1(2):58–65. https://doi.org/10.53293/jasn.2021.11637
Kandasamy S, Muthusamy G, Balakrishnan S, Duraisamy S, Thangasamy S, Seralathan KK, Chinnappan S (2016) Optimization of protease production from surface-modified coffee pulp waste and corncobs using Bacillus sp. by SSF. 3 Biotech 6(2):1–11. https://doi.org/10.1007/s13205-016-0481-z
Kazan D, Denizci AA, Öner MNK, Erarslan A (2005) Purification and characterization of a serine alkaline protease from Bacillus clausii GMBAE 42. J Ind Microbiol Biotechnol 32(8):335–344. https://doi.org/10.1007/s10295-005-0260-z
Khursade PS, Galande SH, Krishna PS, Prakasham RS (2019) Stenotrophomonas maltophilia Gd2: a potential and novel isolate for fibrinolytic enzyme production. Saudi J Biol Sci 26(7):1567–1575. https://doi.org/10.1016/j.sjbs.2018.10.014
Kotb E (2015) The biotechnological potential of subtilisin-like fibrinolytic enzyme from a newly isolated Lactobacillus plantarum KSK-II in blood destaining and antimicrobials. Biotechnol Prog 31(2):316–324. https://doi.org/10.1002/btpr.2033
Kumar SS, Haridas M, Sabu A (2018a) Process optimization for production of a fibrinolytic enzyme from newly isolated marine bacterium Pseudomonas aeruginosa KU1. Biocatal Agric Biotechnol 14:33–39
Kumar S, Stecher G, Li M, Knyaz C, Tamura K (2018b) MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol 35(6):1547. https://doi.org/10.1093/molbev/msy096
Lateef A, Adelere IA, Gueguim-Kana EB (2015) Bacillus safensis LAU 13: a new source of keratinase and its multi-functional biocatalytic applications. Biotechnol Biotechnol Equip 29(1):54–63. https://doi.org/10.1080/13102818.2014.986360
Mahajan PM, Nayak S, Lele SS (2012) Fibrinolytic enzyme from newly isolated marine bacterium Bacillus subtilis ICTF-1: media optimization, purification and characterization. J Biosci Bioeng 113(3):307–314. https://doi.org/10.1016/j.jbiosc.2011.10.023
Majumdar S, Sarmah B, Gogoi D, Banerjee S, Ghosh SS, Banerjee S, Mukherjee AK (2014) Characterization, mechanism of anticoagulant action, and assessment of therapeutic potential of a fibrinolytic serine protease (Brevithrombolase) purified from Brevibacillus brevis strain FF02B. Biochimie 103:50–60. https://doi.org/10.1016/j.biochi.2014.04.002
Masi C, Gemechu G, Tafesse M (2021) Isolation, screening, characterization, and identification of alkaline protease-producing bacteria from leather industry effluent. Ann Microbiol 71:1–11. https://doi.org/10.1186/s13213-021-01631-x
Merlyn Keziah S, Subathra Devi C (2021) Molecular identification of autochthonous bacterial fibrinolytic protein producers from fermentative food preparations. Indian J Biotechnol 20:154–162
Mitsuiki S, Ichikawa M, Oka T, Sakai M, Moriyama Y, Sameshima Y, Furukawa K (2004) Molecular characterization of a keratinolytic enzyme from an alkaliphilic Nocardiopsis sp. TOA-1. Enzyme Microbial Technology 34(5):482–489. https://doi.org/10.1016/j.enzmictec.2003.12.011
Myers RH, Montgomery DC, Anderson-Cook CM (2016) Response surface methodology: process and product optimization using designed experiments. Wiley, New Jersey
Paik HD, Lee SK, Heo S, Kim SY, Lee HH, Kwon TJ (2004) Purification and characterization of the fibrinolytic enzyme produced by Bacillus subtilis KCK-7 from Chungkookjang. J Microbiol Biotechnol 14(4):829–835
Prabhu N, Gajendran T, Karthikadevi S, Archana A, Arthe R (2021) Utilization of sugarcane bagasse for enhancement production of fibrinolytic enzyme using statistical approach. Clean Eng Technol 5:100269. https://doi.org/10.1016/j.clet.2021.100269
Prakasham RS, Rao CS, Sarma PN (2006) Green gram husk-an inexpensive substrate for alkaline protease production by Bacillus sp. in solid-state fermentation. Bioresour Technol 97(13):1449–1454. https://doi.org/10.1016/j.biortech.2005.07.015
Rajaselvam J, Benit N, Alotaibi SS, Rathi MA, Srigopalram S, Biji GD, Vijayaraghavan P (2021) In vitro fibrinolytic activity of an enzyme purified from Bacillus amyloliquefaciens strain KJ10 isolated from soybean paste. Saudi J Biol Sci 28(8):4117–4123. https://doi.org/10.1016/j.sjbs.2021.04.061
Razzaq A, Shamsi S, Ali A, Ali Q, Sajjad M, Malik A, Ashraf M (2019) Microbial proteases applications. Front Bioeng Biotechnol 7:110. https://doi.org/10.3389/fbioe.2019.00110
Sharma C, Salem GEM, Sharma N, Gautam P, Singh R (2019) Thrombolytic potential of novel thiol-dependent fibrinolytic protease from Bacillus cereus RSA1. Biomolecules 10(1):3. https://doi.org/10.3390/biom10010003
Simkhada JR, Mander P, Cho SS, Yoo JC (2010) A novel fibrinolytic protease from Streptomyces sp CS684. Process Biochem 45(1):88–93. https://doi.org/10.1016/j.procbio.2009.08.010
Singh S, Bajaj BK (2017) Agroindustrial/forestry residues as substrates for production of thermoactive alkaline protease from Bacillus licheniformis K-3 having multifaceted hydrolytic potential. Waste Biomass Valorizat 8(2):453–462. https://doi.org/10.1007/s12649-016-9577-2
Singh V, Haque S, Niwas R, Srivastava A, Pasupuleti M, Tripathi C (2017) Strategies for fermentation medium optimization: an in-depth review. Front Microbiol 7:2087. https://doi.org/10.3389/fmicb.2016.02087
Taneja K, Bajaj BK, Kumar S, Dilbaghi N (2017) Production, purification and characterization of fibrinolytic enzyme from Serratia sp. KG-2–1 using optimized media. 3 Biotech 7(3):1–15. https://doi.org/10.1007/s13205-017-08084
Taneja K, Kumar Bajaj B, Kumar S, Dilbaghi N (2019) Process optimization for production and purification of novel fibrinolytic enzyme from Stenotrophomonas sp. KG-16–3. Biocatal Biotransform 37(2):124–138. https://doi.org/10.1080/10242422.2018.1504925
Verma P, Chatterjee S, Keziah MS, Devi SC (2018) Fibrinolytic protease from marine Streptomyces rubiginosus VITPSS1. Cardiovasc Hematol Agents Med Chem (form Curr Med Chem Cardiovasc Hematol Agents) 16(1):44–55. https://doi.org/10.2174/1871525716666180226141551
Vijayaraghavan P, Prakash Vincent SG (2014) Medium optimization for the production of fibrinolytic enzyme by Paenibacillus sp. IND8 using response surface methodology. Sci World J. https://doi.org/10.1155/2014/276942
Vijayaraghavan P, Flanet Raj SR, Vincent SGP (2015) Purification and characterization of fibrinolytic enzyme from Pseudoalteromonas sp., IND11 and its in vitro activity on blood clot. Int J Biol Chem 9(1):11–20
World Health Organization (2022) The World’s most common cause of death, cardiovascular diseases (CVDs), global facts and figures. https://www.who.int/health-topics/cardiovascular-diseases. Accessed 25 September 2022
Yao Z, Kim JA, Kim JH (2019) Characterization of a fibrinolytic enzyme secreted by Bacillus velezensis BS2 isolated from sea squirt jeotgal. J Microbiol Biotechnol 29(3):347–356. https://doi.org/10.4014/jmb.1810.10053
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All the authors contributed to the study conception and design. Material preparation, data collection, and analysis were performed by BU, MŞT, and AG. The first draft of the manuscript was written by BU and all the authors commented on previous versions of the manuscript. All the authors read and approved the final manuscript.
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Umay, B., Gül, A. & Tanyıldızı, M.Ş. Isolation, identification, and optimization of the fibrinolytic protease-producing strains. Arch Microbiol 205, 135 (2023). https://doi.org/10.1007/s00203-023-03486-z
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DOI: https://doi.org/10.1007/s00203-023-03486-z