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Interdisciplinary Approaches Incorporating Computational Intelligence in Modern Pharmacognosy to Address Biological Problems

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Electronic Systems and Intelligent Computing

Part of the book series: Lecture Notes in Electrical Engineering ((LNEE,volume 686))

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Abstract

Computer simulations to address research problems have touched almost all the sectors of science. Ethnopharmacological data demands linkage with different biomedical databases for both prospective and retrospective studies. Computational intelligence bridges the gap between diverse resources already available (from the molecular level to macroscopic characteristics of drugs) marking its significance in computer-aided drug design and gives an insight into the mechanism of action of bioactive compounds. Computational methods are utilized to study the process of extraction, isolation, structure prediction, metabolomics, biosynthesis, dereplication, phytochemical library construction, and assessment of their bioactivity. Further, in silico models aim to minimize the cost and time associated with conventional screening techniques. Electronic structure determination, docking, geometry optimization are few methods to name that are popular in biological sciences. Softwares like Gaussian 94, MOPAC, GAMES, Spartan, and Sybyl showed their dominant role in deciphering the chemistry underlying a process. The complexity of collecting vast biological data and extracting the information of interest for subsequent knowledge provision and deduction of conclusions is mollified to a great extent using bioinformatics. This review discusses the hurdles, current progress, and potential of computational intelligence in drug discoveries/interactions.

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References

  1. Strohl WR (2000) The role of natural products in a modern drug discovery program. Drug Discov Today 5(2):39–41

    Google Scholar 

  2. Saito K, Matsuda F (2010) Metabolomics for functional genomics, systems biology, and biotechnology. Annu Rev Plant Biol 61:463–489

    Article  Google Scholar 

  3. Sarkar, IN (2009) Biodiversity informatics: the emergence of a field. S1

    Google Scholar 

  4. Cao C, Wang H, Sui Y (2004) Knowledge modeling and acquisition of traditional Chinese herbal drugs and formulae from text. Artif Intell Med 32(1):3–13

    Article  Google Scholar 

  5. Samwald M et al (2010) Integrating findings of traditional medicine with modern pharmaceutical research: the potential role of linked open data. Chin Med 5(1):43

    Google Scholar 

  6. Chen H et al (2007) Towards semantic e-science for traditional Chinese medicine. BMC Bioinf 8(3):S6

    Google Scholar 

  7. Rhee SY, Dickerson J, Xu D (2006) Bioinformatics and its applications in plant biology. Annu Rev Plant Biol 57:335–360

    Google Scholar 

  8. Loub WD et al (1985) NAPRALERT: computer handling of natural product research data. J Chem Inf Comput Sci 25(2):99–103

    Article  Google Scholar 

  9. Sharma V, Neil Sarkar IN (2012) Bioinformatics opportunities for identification and study of medicinal plants. Brief Bioinf 14(2):238–250

    Google Scholar 

  10. Zeng S et al (2010) Development of a EST dataset and characterization of EST-SSRs in a traditional Chinese medicinal plant, Epimedium sagittatum (Sieb. Et Zucc.) Maxim. BMC Genom 11(1):94

    Google Scholar 

  11. Chen S et al (2011) 454 EST analysis detects genes putatively involved in ginsenoside biosynthesis in Panax ginseng. Plant Cell Rep 30(9):1593

    Article  Google Scholar 

  12. Mochida K et al (2011) Global landscape of a co-expressed gene network in barley and its application to gene discovery in Triticeae crops. Plant Cell Physiol 52(5):785–803

    Google Scholar 

  13. Rajoka MI et al (2014) Medherb: an interactive bioinformatics database and analysis resource for medicinally important herbs. Curr Bioinform 9:23–27

    Google Scholar 

  14. Mukherjee PK (ed) (2015) Evidence-based validation of herbal medicine. Elsevier

    Google Scholar 

  15. Sarker SD, Nahar L (2018) An introduction to computational phytochemistry. Computational Phytochemistry. Elsevier, pp 1–41

    Google Scholar 

  16. Liu J et al (2009) Optimization of polysaccharides (ABP) extraction from the fruiting bodies of Agaricus blazei Murill using response surface methodology (RSM). Carbohydr Polym 78(4):704–709

    Google Scholar 

  17. Tomaz I et al (2016) Multi‐response optimisation of ultrasound‐assisted extraction for recovery of flavonoids from red grape skins using response surface methodology. Phytochem Anal 27(1):13–22

    Google Scholar 

  18. Schwabe T et al (2005) Neural networks for secondary metabolites prediction in Artemisia genus (Asteraceae). Internet Electron J Mol Des 4:9–16

    Google Scholar 

  19. Shoichet BK (2004) Virtual screening of chemical libraries. Nature 432(7019):862

    Google Scholar 

  20. Subramaniam S, Mehrotra M, Gupta D (2008) Virtual high throughput screening (vHTS)—A perspective. Bioinformation 3(1):14

    Article  Google Scholar 

  21. Fischedick JT et al (2010) Metabolic fingerprinting of Cannabis sativa L., cannabinoids and terpenoids for chemotaxonomic and drug standardization purposes. Phytochemistry 71(17–18):2058–2073

    Google Scholar 

  22. Paton AJ et al (2004) Phylogeny and evolution of basils and allies (Ocimeae, Labiatae) based on three plastid DNA regions. Mol Phylogene Evol 31(1):277–299

    Google Scholar 

  23. Larsen MM et al (2010) Using a phylogenetic approach to selection of target plants in drug discovery of acetylcholinesterase inhibiting alkaloids in Amaryllidaceae tribe Galantheae. Biochem Syst Ecol 38(5):1026–1034

    Google Scholar 

  24. Do Minh T, Nguyen Van T (2019) Isoflavones and isoflavone glycosides: structural-electronic properties and antioxidant relations—A case of DFT study. J Chem

    Google Scholar 

  25. Gopalakrishnan SB, Kalaiarasi T, Subramanian R (2014) Comparative DFT study of phytochemical constituents of the fruits of Cucumis trigonus Roxb. and Cucumis sativus Linn. J Comput Methods Phys

    Google Scholar 

  26. Li H et al (2005) Prediction of genotoxicity of chemical compounds by statistical learning methods. Chem Res Toxicol 18(6):1071–1080

    Google Scholar 

  27. Mahendran R (2016) In silico QSAR and molecular docking studies of selected medicinal plant compounds against ns5 & ns3 protein of dengue virus: a comparative approach. Int J Pharma Bio Sci, Sci

    Google Scholar 

  28. Das S et al (2017) Prediction of Anti‐Alzheimer’s activity of flavonoids targeting acetylcholinesterase in silico. Phytochem Anal 28(4):324–331

    Google Scholar 

  29. Wang Y, Wang X, Cheng Y (2006) A computational approach to botanical drug design by modeling quantitative composition–activity relationship. Chem Biol Drug Des 68(3):166–172

    Article  Google Scholar 

  30. Bushkov NA et al (2016) Computational insight into the chemical space of plant growth regulators. Phytochemistry 122:254–264

    Google Scholar 

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Correspondence to Piyali Basak .

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Adhikary, T., Basak, P. (2020). Interdisciplinary Approaches Incorporating Computational Intelligence in Modern Pharmacognosy to Address Biological Problems. In: Mallick, P.K., Meher, P., Majumder, A., Das, S.K. (eds) Electronic Systems and Intelligent Computing. Lecture Notes in Electrical Engineering, vol 686. Springer, Singapore. https://doi.org/10.1007/978-981-15-7031-5_2

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  • DOI: https://doi.org/10.1007/978-981-15-7031-5_2

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  • Publisher Name: Springer, Singapore

  • Print ISBN: 978-981-15-7030-8

  • Online ISBN: 978-981-15-7031-5

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