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XML, Ontologies, and Their Clinical Applications

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Translational Biomedical Informatics

Part of the book series: Advances in Experimental Medicine and Biology ((AEMB,volume 939))

Abstract

The development of information technology has resulted in its penetration into every area of clinical research. Various clinical systems have been developed, which produce increasing volumes of clinical data. However, saving, exchanging, querying, and exploiting these data are challenging issues. The development of Extensible Markup Language (XML) has allowed the generation of flexible information formats to facilitate the electronic sharing of structured data via networks, and it has been used widely for clinical data processing. In particular, XML is very useful in the fields of data standardization, data exchange, and data integration. Moreover, ontologies have been attracting increased attention in various clinical fields in recent years. An ontology is the basic level of a knowledge representation scheme, and various ontology repositories have been developed, such as Gene Ontology and BioPortal. The creation of these standardized repositories greatly facilitates clinical research in related fields. In this chapter, we discuss the basic concepts of XML and ontologies, as well as their clinical applications.

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Author information

Authors and Affiliations

  1. Suzhou Industrial Park Institute of Services Outsourcing, No. 99 Ruoshui Road, Suzhou Industrial Park, Suzhou, 215123, Jiangsu, China

    Chunjiang Yu

  2. Center for Systems Biology, Soochow University, No. 1 Shizi Street, 206, 215006, Suzhou, Jiangsu, China

    Bairong Shen

Authors
  1. Chunjiang Yu
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  2. Bairong Shen
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Corresponding author

Correspondence to Bairong Shen .

Editor information

Editors and Affiliations

  1. Center for Systems Biology, Soochow University, Jiangsu, China

    Bairong Shen

  2. School of Informatics and Computing, Indiana University, Bloomington, Indiana, USA

    Haixu Tang

  3. Department of Biomedical Informatics, University of California San Diego, La Jolla, California, USA

    Xiaoqian Jiang

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© 2016 Springer Science+Business Media Singapore

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Yu, C., Shen, B. (2016). XML, Ontologies, and Their Clinical Applications. In: Shen, B., Tang, H., Jiang, X. (eds) Translational Biomedical Informatics. Advances in Experimental Medicine and Biology, vol 939. Springer, Singapore. https://doi.org/10.1007/978-981-10-1503-8_11

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