Skip to main content

Biogeographic Pattern of Japanese Birds: A Cluster Analysis of Faunal Similarity and a Review of Phylogenetic Evidence

  • Chapter
  • First Online:
Species Diversity of Animals in Japan

Part of the book series: Diversity and Commonality in Animals ((DCA))

Abstract

The Japanese islands accommodate 102 native breeding species/subspecies of water birds (comprising 99 species belonging to 58 genera and 22 families) and 246 native breeding species/subspecies of land birds (comprising 156 species belonging to 101 genera and 40 families). The degree of endemism at the species/subspecies level is low in the former (11.8 %) and high in the latter (47.2 %). In this chapter, I investigated the geographic patterns of the community composition of land birds in detail. Using hierarchical and nonhierarchical methods, the cluster analysis of faunal similarity revealed that, despite high vagility, land birds on continental islands exhibited the same biogeographic patterns as other terrestrial vertebrates. This result suggests that the land birds and non-volant terrestrial vertebrates have evolved under the strong influence of the island geohistory, including the appearance and disappearance of land bridges. The cluster analysis also revealed that, in contrast to the non-volant terrestrial vertebrates, the Japanese land birds formed comparatively rich and distinct faunas on these oceanic islands.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 229.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 299.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 299.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  • Abe H, Ishii N, Itoo T, Kaneko Y, Maeda K, Miura S, Yoneda M (2005) A guide to the mammals of Japan, 2nd edn. Tokai University Press, Hadano

    Google Scholar 

  • BirdLife International (2015) Species factsheet: Gorsachius goisagi. Downloaded from http://www.birdlife.org on 09/11/2015

  • Choi C-Y, Nam H-Y (2008) Distribution of the Japanese Wagtail Motacilla grandis in Korea. Ornithol Sci 7(1):85–91

    Article  Google Scholar 

  • Cracraft J (1983) Species concepts and speciation analysis. In: Johnston R (ed) Current ornithology, vol 1. Springer, New York, pp 159–187. doi:10.1007/978-1-4615-6781-3_6

    Chapter  Google Scholar 

  • Dekker R, Dickinson E, Morioka H (2001) Systematic notes on Asian birds. 18. Some nomenclatural issues relating to Japanese taxa described in the Planches Coloriées (1820–1839) and Fauna Japonica, Aves (1844–1850). Zool Verh 335:199–214

    Google Scholar 

  • del Hoyo J, Elliott A, Sargatal J, Cabot J (eds) (2010) Handbook of the birds of the world, vol 15. Lynx Edicions, Barcelona

    Google Scholar 

  • Dong L, Wei M, Alström P, Huang X, Olsson U, Shigeta Y, Zhang Y, Zheng G (2015) Taxonomy of the Narcissus Flycatcher Ficedula narcissina complex: an integrative approach using morphological, bioacoustic and multilocus DNA data. Ibis 157(2):312–325. doi:10.1111/ibi.12238

    Article  Google Scholar 

  • Felsenstein J (1989) PHYLIP: phylogeny inference package (version 3.2). Cladistics 5(2):164–166. doi:10.1111/j.1096-0031.1989.tb00562.x

    Google Scholar 

  • Gooders J (1982) Collins British birds. William Collins, London

    Google Scholar 

  • Hachisuka M (1925) A comparative hand list of the birds of Japan and the British isles. Cambridge University Press, Cambridge

    Google Scholar 

  • Holt BG, Lessard J-P, Borregaard MK, Fritz SA, Araújo MB, Dimitrov D, Fabre P-H, Graham CH, Graves GR, Jønsson KA, Nogués-Bravo D, Wang Z, Whittaker RJ, Fjeldså J, Rahbek C (2013) An update of Wallace’s zoogeographic regions of the world. Science 339(6115):74–78. doi:10.1126/science.1228282

    Article  CAS  PubMed  Google Scholar 

  • Kerr KCR, Birks SM, Kalyakin MV, Red’kin YA, Koblik EA, Hebert PDN (2009) Filling the gap: COI barcode resolution in eastern Palearctic birds. Front Zool 6:29–29. doi:10.1186/1742-9994-6-29

    Article  PubMed  PubMed Central  Google Scholar 

  • Kuroda N (1932) A revision of the types of birds described by Japanese authors during the years 1923 to 1931. Novit Zool 37:384–405

    Google Scholar 

  • McKay BD, Mays HL, C-T Y, Wan D, Higuchi H, Nishiumi I (2014) Incorporating color into integrative taxonomy: analysis of the varied tit (Sittiparus varius) complex in East Asia. Syst Biol. doi:10.1093/sysbio/syu016

    PubMed  Google Scholar 

  • Mearns B, Mearns R (1988) Biographies for bird watchers: the lives of those commemorated in Western Palearctic bird names. Academic Press, London

    Google Scholar 

  • Merriam-Webster (1997) Merriam-Webster’s geographical dictionary. Merriam-Webster, Springfield

    Google Scholar 

  • Millien-Parra V, Jaeger J-J (1999) Island biogeography of the Japanese terrestrial mammal assemblages: an example of a relict fauna. J Biogeogr 26(5):959–972. doi:10.1046/j.1365-2699.1999.00346.x

    Article  Google Scholar 

  • Morioka H (1971) Alpine Avifauna of Hokkaido, Japan. Mem Natl Sci Mus 4:43–54

    Google Scholar 

  • Morioka H (1974) Avifauna of the Ryukyu Islands and its origin. Mem Natl Sci Mus 7:203–211

    Google Scholar 

  • Morioka H (1979) Taxonomic and distributional notes on Japanese birds: 1. Notes on Turdus chrysolaus orii. Tori 28(4):125–129. doi:10.3838/jjo1915.28.125

    Google Scholar 

  • Morioka H (1990) Breeding birds of the Tokara Islands and their origin. Mem Natl Sci Mus 23:151–166

    Google Scholar 

  • Morioka H (1994) Subspecific status of certain birds breeding in Hokkaido. Mem Natl Sci Mus 27:165–173

    Google Scholar 

  • Morioka H, Sakane T (1980) Subalpine avifauna of the Ohmine mountain range in the Kii Peninsula, Japan. Mem Natl Sci Mus 13:53–58

    Google Scholar 

  • Morioka H, Dickinson EC, Hiraoka T, Allen D, Yamasaki T (2005) Types of Japanese birds. Natl Sci Mus Monogr 28:1–154

    Google Scholar 

  • Nakamura T, Nakamua M (1995) Bird’s life in Japan with color pictures: birds of mountain, woodland and field. Hoikusha, Osaka

    Google Scholar 

  • Nishiumi I, Morioka H (2009) A new subspecies of Zoothera dauma (Aves, Turdidae) from Iriomotejima, southern Ryukyus, with comments on Z. d. toratugumi. Bull Natl Mus Nat Sci Ser A Zool 35(2):113–124

    Google Scholar 

  • Ota H (1998) Geographic patterns of endemism and speciation in amphibians and reptiles of the Ryukyu Archipelago, Japan, with special reference to their paleogeographical implications. Res Popul Ecol 40(2):189–204. doi:10.1007/BF02763404

    Article  Google Scholar 

  • Ota H (2000) The current geographic faunal pattern of reptiles and amphibians of the Ryukyu Archipelago and adjacent regions. Tropics 10(1):51–62. doi:10.3759/tropics.10.51

    Article  Google Scholar 

  • Parkin D, Knox A (2010) The status of birds in Britain and Ireland. Black, London

    Google Scholar 

  • Saitoh T, Alström P, Nishiumi I, Shigeta Y, Williams D, Olsson U, Ueda K (2010) Old divergences in a boreal bird supports long-term survival through the Ice Ages. BMC Evol Biol 10:35. doi:10.1186/1471-2148-10-35

    Article  PubMed  PubMed Central  Google Scholar 

  • Saitoh T, Sugita N, Someya S, Iwami Y, Kobayashi S, Kamigaichi H, Higuchi A, Asai S, Yamamoto Y, Nishiumi I (2015) DNA barcoding reveals 24 distinct lineages as cryptic bird species candidates in and around the Japanese Archipelago. Mol Ecol Resour 15(1):177–186. doi:10.1111/1755-0998.12282

    Article  CAS  PubMed  Google Scholar 

  • Seki S, Tokorozaki S, Mizoguchi F, Takagi S, Nakamura N, Crystal F (2011) Avifauna of the Tokara Islands, northern Ryukyu Archipelago. Bull For For Prod Res Inst 10(4):183–229

    Google Scholar 

  • Sengoku S, Hikida T, Matsui M, Nakaya K (eds) (1996) The encyclopedia of the animals in Japan, vol. 5. Amphibians, reptiles, Chondrichthyes. Heibonsha, Tokyo

    Google Scholar 

  • Short LL (1973) Notes on Okinawan birds and Ryukyu Island zoogeography. Ibis 115(2):264–267. doi:10.1111/j.1474-919X.1973.tb02642.x

    Article  Google Scholar 

  • Statistics Bureau Ministry of Internal Affairs and Communications (2015) Japan statistical yearbook 2015. http://www.stat.go.jp/data/nenkan/index1.htm. Accessed 10 June 2015

  • Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30(12):2725–2729. doi:10.1093/molbev/mst197

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • The American Ornithologists’ Union (1919) Notes and news. Auk 36(4):628–636. doi:10.2307/4073424

    Article  Google Scholar 

  • The Ornithological Society of Japan (1974) Check-list of Japanese birds, 5th edn. Gakken, Tokyo

    Google Scholar 

  • The Ornithological Society of Japan (2000) Check-list of Japanese birds, 6th edn. The Ornithological Society of Japan, Obihiro

    Google Scholar 

  • The Ornithological Society of Japan (2012) Check-list of Japanese birds, 7th edn. The Ornithological Society of Japan, Sanda

    Google Scholar 

  • The World Bank (2015) World development indicators. World Bank, Washington, DC. Accessed 8 July 2015

    Book  Google Scholar 

  • Vaurie C (1959) The birds of the Palearctic Fauna: order Passeriformes. Witherby, London

    Google Scholar 

  • Vaurie C (1965) The birds of the Palearctic Fauna: non-Passeriformes. Witherby, London

    Google Scholar 

  • Yamasaki T (2006) Taxonomic status of populations of the light-vented bulbul Pycnonotus sinensis (Gmelin, 1789) (Passeriformes: Pycnonotidae) in Taiwan and the southern Ryukyus. Zool Stud 45(2):168–179

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Takeshi Yamasaki .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2017 Springer Japan

About this chapter

Cite this chapter

Yamasaki, T. (2017). Biogeographic Pattern of Japanese Birds: A Cluster Analysis of Faunal Similarity and a Review of Phylogenetic Evidence. In: Motokawa, M., Kajihara, H. (eds) Species Diversity of Animals in Japan. Diversity and Commonality in Animals. Springer, Tokyo. https://doi.org/10.1007/978-4-431-56432-4_4

Download citation

Publish with us

Policies and ethics