Skip to main content

Complex Systems Modelling for Virtual Agriculture

  • Conference paper
  • First Online:
Practical Applications of Intelligent Systems

Part of the book series: Advances in Intelligent Systems and Computing ((AISC,volume 279))

  • 900 Accesses

Abstract

Agriculture is a key development for survival of all the human beings. When the population is increased while the arable land surface is reduced, emerging technologies are greatly required to improve agricultural productions. One of the emerging research domain that could contribute to this improvement is computational plant modelling, which treats plants as complex systems and uses simulations to carry out virtual experiments as an alternative to the time- and resource- consuming real-world investigations. Plant models could focus on different levels progressing from atoms to the whole atmosphere. Architectural models and functional-structural models, mainly addressing the organ-level development and function, have been widely developed against problems in agricultural practice. However, almost all the current plant models and supporting software tools are not user-friendly enough, leaving an interval for us to fill before virtual agriculture becomes more “real” and “realistic”.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 169.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 219.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Weng G et al (1999) Complexity in biological signaling systems. Science 284:92–96

    Article  Google Scholar 

  2. van Riel NAW (2006) Dynamic modelling and analysis of biochemical networks: mechanism based models and model-based experiments. Brief Bioinform 7:364–374

    Article  Google Scholar 

  3. Stelling J (2007) Understandable complexity. Sci STKE :pe9

    Google Scholar 

  4. Minorsky PV (2003) Achieving the in silico plant. Systems biology and the future of plant biological research. Plant Physiol 132:404–409

    Article  Google Scholar 

  5. Hammer GL et al (2004) On systems thinking, systems biology, and the in silico plant. Plant Physiol 134:909–911

    Article  Google Scholar 

  6. Haefner JW (2005) Modeling biological systems: principles and applications. Springer, New York

    Google Scholar 

  7. Hill LL et al (2001) A content standard for computational models. The Magazine of Digital Library Research 7

    Google Scholar 

  8. Krogh D (2009) Biology: a guide to the natural World. Pearson/Benjamin Cummings, San Francisco

    Google Scholar 

  9. Prusinkiewicz P (1998) Modeling of spatial structure and development of plants. Sci Hortic 74:113–149

    Article  Google Scholar 

  10. Hanan JS, Room PM (1996) Practical aspects of virtual plant research. In: Michalewicz MT (ed) Advances in computational life sciences. Kevin Jeans, Collingwood

    Google Scholar 

  11. Halle F et al (1978) Tropical trees and forests: an architectural analysis. Springer, Heidelberg

    Book  Google Scholar 

  12. Room PM et al (1994) Module and metamer dynamics and virtual plants. In: Begon M, Fitter AH (ed) Advances in ecological research. Academic Press, London

    Google Scholar 

  13. Godin C et al (1999) A method for describing plant architecture which integrates topology and geometry. Ann Bot 84:343–357

    Article  Google Scholar 

  14. Honda H et al (1981) Computer simulation of branch interaction and regulation by unequal flow rates in botanical trees. Am J Bot 68:569–585

    Article  Google Scholar 

  15. Honda H et al (1982) Two geometrical models of branching of botanical trees. Ann Bot 49:1–12

    Google Scholar 

  16. de Reffye P et al (1988) Plant models faithful to botanical structure and development. Comput Graph 22:151–158

    Article  Google Scholar 

  17. Prusinkiewicz P et al (1988) Development models of herbaceous plants for computer imagery purposes. Comput Graph 22:141–150

    Article  Google Scholar 

  18. Prusinkiewicz P, Lindenmayer A (1990) The algorithmic beauty of plants. Springer, New York

    Book  MATH  Google Scholar 

  19. Jaeger M, de Reffye P (1992) Basic concepts of computer simulation of plant growth. J Biosci 17:275–291

    Article  Google Scholar 

  20. Perttunen J et al (1996) LIGNUM: a tree model based on simple structural units. Ann Bot 77:87–98

    Article  Google Scholar 

  21. Prusinkiewicz P (2004) Modeling plant growth and development. Curr Opin Plant Biol 7:79–83

    Article  Google Scholar 

  22. Danjon F, Reubens B (2008) Assessing and analyzing 3D architecture of woody root systems, a review of methods and applications in tree and soil stability, resource acquisition and allocation. Plant Soil 303:1–34

    Article  Google Scholar 

  23. Jourdan C, Rey H (1997) Modelling and simulation of the architecture and development of the oil-palm (Elaeis guineensis Jacq.) root system. Plant Soil 190:217–233

    Article  Google Scholar 

  24. Godin C, Sinoquet H (2005) Functional-structural plant modelling. New Phytol 166:705–708

    Article  Google Scholar 

  25. Barthélémy D, Caraglio Y (2007) Plant architecture: a dynamic, multilevel and comprehensive approach to plant form, structure and ontogeny. Ann Bot 99:375–407

    Article  Google Scholar 

  26. Vos J et al (2010) Functional–structural plant modelling: a new versatile tool in crop science. J Exp Bot 61:2101–2115

    Article  Google Scholar 

  27. Hu B, Jaeger M (2003) Plant growth modeling and applications. In: Proceedings PMA03: 2003 International symposium on plant growth modeling, simulation, visualization and their applications. Springer

    Google Scholar 

  28. Fourcaud T et al (2008) Plant growth modelling and applications: the increasing importance of plant architecture in growth models. Ann Bot 101:1053–1063

    Article  Google Scholar 

  29. DeJong TM et al (2011) Using functional-structural plant models to study, understand and integrate plant development and ecophysiology. Ann Bot 108:987–989

    Article  Google Scholar 

  30. Guo Y et al (2011) Plant growth and architectural modelling and its applications. Ann Bot 107:723–727

    Article  Google Scholar 

  31. Hanan J (2012) Functional structural plant modelling: applications beyond the plant. In: Kang M, Dumont Y (ed) Plant growth modeling and applications, proceedings of PMA12. IEEE Computer Society

    Google Scholar 

  32. Room P et al (1996) Virtual plants: new perspectives for ecologists, pathologists and agricultural scientists. Trends Plant Sci 1:33–38

    Article  Google Scholar 

  33. Hanan J (1997) Virtual plants—integrating architectural and physiological models. Environ Model Softw 12:35–42

    Article  Google Scholar 

  34. Prusinkiewicz P (2004) Art and science for life: designing and growing virtual plants with L-systems. Acta Hortic 630:5–28

    Google Scholar 

  35. Lindenmayer A (1968) Mathematical models for cellular interaction in development, Parts I and II. J Theor Biol 18:280–315

    Article  Google Scholar 

  36. Hemmerling R et al (2008) The rule-based language XL and the modelling environment GroIMP illustrated with simulated tree competition. Funct Plant Biol 35:739–750

    Article  Google Scholar 

  37. Hu BG et al (2003) GreenLab: a new methodology towards plant functional-structural model—structural part. In: Hu B, Jaeger M (ed) Plant growth modeling and applications. Proceedings PMA03: 2003 international symposium on plant growth modeling, simulation, visualization and their applications. Springer

    Google Scholar 

  38. Yan HP et al (2004) A dynamic, architectural plant model simulating resource-dependent growth. Ann Bot 93:591–602

    Article  Google Scholar 

  39. Guo Y et al (2005) Parameter optimization and field validation of the functional–structural model GREENLAB for maize. Ann Bot 97:217–230

    Article  Google Scholar 

  40. Pradal C et al (2008) OpenAlea: a visual programming and component-based software platform for plant modelling. Funct Plant Biol 35:751–760

    Article  Google Scholar 

  41. Graham PH, Vance CP (2003) Legumes: importance and constraints to greater use. Plant Physiol 131:872–877

    Article  Google Scholar 

  42. Scott PT et al (2008) Pongamia pinnata: an untapped resource for the biofuels industry of the future. BioEnergy Res 1:2–11

    Article  Google Scholar 

  43. Kinkema M et al (2006) Legume nodulation: successful symbiosis through short- and long-distance signalling. Funct Plant Biol 33:707–721

    Article  Google Scholar 

  44. Carroll BJ et al (1985) A supernodulation and nitrate-tolerant symbiotic (nts) soybean mutant. Plant Physiol 78:34–40

    Article  Google Scholar 

  45. Carroll BJ et al (1985) Isolation and properties of soybean [Glycine max (L.) Merr.] mutants that nodulate in the presence of high nitrate concentrations. Proc Natl Acad Sci USA 82:4162–4166

    Article  Google Scholar 

  46. Delves AC et al (1986) Regulation of the soybean-rhizobium nodule symbiosis by shoot and root factors. Plant Physiol 82:588–590

    Article  Google Scholar 

  47. Gresshoff PM (2003) Post-genomic insights into plant nodulation symbioses. Genome Biol 4:201

    Article  Google Scholar 

  48. Oka-Kira E, Kawaguchi M (2006) Long-distance signaling to control root nodule number. Curr Opin Plant Biol 9:496–502

    Article  Google Scholar 

  49. Han L et al (2007) Virtual soybean—a computational model for studying autoregulation of nodulation. In: The 5th international workshop on functional structural plant models, Napier, New Zealand

    Google Scholar 

  50. Han L et al (2009) Modelling root development with signalling control: a case study based on legume autoregulation of nodulation. In: Li B et al (eds) Plant growth modeling and applications, proceedings of PMA09. IEEE Computer Society, Los Alamitos

    Google Scholar 

  51. Han L et al (2011) A functional-structural modelling approach to autoregulation of nodulation. Ann Bot 107:855–863

    Article  Google Scholar 

  52. Han L et al (2010) Computational complementation: a modelling approach to study signalling mechanisms during legume autoregulation of nodulation. PLoS Comput Biol 6:e1000685

    Article  Google Scholar 

  53. Lespinasse Y (1992) Breeding apple tree: aims and methods. In: The joint conference of the EAPR breeding and varietal assessment section and the EUCARPIA potato section, Landerneau, France

    Google Scholar 

  54. Laurens F et al (2000) Integration of architectural types in French programmes of ligneous fruit species genetic improvement. Fruits 55:141–152

    Google Scholar 

  55. Costes E et al (2008) MAppleT: simulation of apple tree development using mixed stochastic and biomechanical models. Funct Plant Biol 35:936–950

    Article  Google Scholar 

  56. Da Silva D et al (2012) Light interception efficiency of apple trees: a multi-scale computational study based on MAppleT model. In: Luo W et al (ed) Proceedings of the fourth international symposium on models for plant growth, environmental control and farm management in protected cultivation. Acta Hortic

    Google Scholar 

  57. Han L et al (2012) Investigating influence of geometrical traits on light interception efficiency of apple trees: a modelling study with MAppleT. In: Kang M, Dumont Y (ed) Plant growth modeling and applications, proceedings of PMA12. IEEE Computer Society

    Google Scholar 

  58. Han L et al (2013) Sensitivity analysis of light interception to geometrical traits of apple trees: an in silico study based on MAppleT model. In: Bourgeois G (ed) Proceedings of the Nineth international symposium on modelling in fruit research and Orchard management. Acta Hortic

    Google Scholar 

  59. Da Silva D et al (2008) Multiscale framework for modeling and analyzing light interception by trees. Multiscale Model Simul 7:910–933

    Article  MATH  MathSciNet  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Liqi Han .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2014 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Zhang, L., Han, L. (2014). Complex Systems Modelling for Virtual Agriculture. In: Wen, Z., Li, T. (eds) Practical Applications of Intelligent Systems. Advances in Intelligent Systems and Computing, vol 279. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-54927-4_99

Download citation

  • DOI: https://doi.org/10.1007/978-3-642-54927-4_99

  • Published:

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-54926-7

  • Online ISBN: 978-3-642-54927-4

  • eBook Packages: EngineeringEngineering (R0)

Publish with us

Policies and ethics