Abstract
This recently established family encompasses two genera, Rikenella and Alistipes. Rikenella is monospecific and contains R. microfusus and Alistipes is comprised of A. putredinis, A. finegoldii, A. onderdonkii and A. shahii. The organisms group together based on 16S rRNA gene phylogenies and share general characteristics including an anaerobic metabolism, the formation of rods, and often resistance to 20 % bile. Members of this family seem specialized to the digestive tract of a number of different animals.
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References
Abe K, Ueki A, Ohtaki Y, Kaku N, Watanabe K, Ueki K (2012) Anaerocella delicata gen. nov., sp. nov., a strictly anaerobic bacterium in the phylum Bacteroidetes isolated from a methanogenic reactor of cattle farms. The Journal of general and applied microbiology 58:405–412
Bomar L, Maltz M et al (2011) Directed culturing of microorganisms using metatranscriptomics. MBio 2(2):e00012–00011
Collins MD, Shah HN, Mitsuoka T (1985) Reclassification of Bacteroides microfusus (Kaneuchi and Mitsuoka) in a New Genus Rikenella, as Rikenella microfusus comb. nov. Appl Microbiol 6:79–81
Flores R, Shi J et al (2012) Association of fecal microbial diversity and taxonomy with selected enzymatic functions. PLoS One 7(6):e39745
Kaneuchi C, Mitsuoka T (1978) Bacteroides microfusus, a New species from the intestines of calves, chickens, and Japanese quails. Int J Syst Bacteriol 28(4):478–481
Krieg NR, Staley JT et al (2012) Rikenellacea fam nov. In: Krieg NR, Staley JT, Brown DR et al (eds) Bergey’s manual of systematic bacteriology. Springer, New York, pp 4–54
Mitsuoka T (1965) Eine verbesserte Methodik der qualitativen und quantitativen Analyse der Darmflora von Menschen und Tieren. Zentralbl Bakteriol Paristenkd Infektsionskr Hyg Abt 1 Orig 195:455–469
Rautio M, Eerola E et al (2003) Reclassification of Bacteroides putredinis (Weinberg et al. 1937) in a new genus Alistipes gen. nov., as Alistipes putredinis comb. nov., and description of Alistipes finegoldii sp. nov., from human sources. Syst Appl Microbiol 26(2):182–188
Saulnier DM, Riehle K et al (2011) Gastrointestinal microbiome signatures of pediatric patients with irritable bowel syndrome. Gastroenterology 141(5):1782–1791
Siddall ME, Min GS et al (2011) Bacterial symbiont and salivary peptide evolution in the context of leech phylogeny. Parasitology 138(13):1815–1827
Song Y, Kononen E et al (2006) Alistipes onderdonkii sp. nov. and Alistipes shahii sp. nov., of human origin. Int J Syst Evol Microbiol 56(Pt 8):1985–1990
Stamatakis A (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688–2690
Tyrrell KL, Warren YA et al (2011) Re-assessment of phenotypic identifications of Bacteroides putredinis to Alistipes species using molecular methods. Anaerobe 17(3):130–134
Weinberg M, Nativelle R, Prévot AR (1937) Les microbes anaérobies. Masson and Co., Paris
Worthen PL, Gode CJ et al (2006) Culture-independent characterization of the digestive-tract microbiota of the medicinal leech reveals a tripartite symbiosis. Appl Environ Microbiol 72(7):4775–4781
Yarza P, Ludwig W, Euzeby J, Amann R, Schleifer KH, Glockner FO, Rossello-Mora R (2010) Update of the All-Species Living Tree Project based on 16S and 23S rRNA sequence analyses. Systematic and applied microbiology 33:291–299
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Graf, J. (2014). The Family Rikenellaceae . In: Rosenberg, E., DeLong, E.F., Lory, S., Stackebrandt, E., Thompson, F. (eds) The Prokaryotes. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-38954-2_134
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DOI: https://doi.org/10.1007/978-3-642-38954-2_134
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