Skip to main content

The Family Porphyromonadaceae

  • Reference work entry
  • First Online:
The Prokaryotes

Abstract

Porphyromonadaceae, a family within the order Bacteroidales, comprises the genera Porphyromonas, Barnesiella, Butyricimonas, Dysgonomonas, Macellibacteroides, Odoribacter, Paludibacter, Parabacteroides, Petrimonas, Proteiniphilum, and Tannerella. The type genus is the genus Porphyromonas. At first, this family comprised the genera Porphyromonas, Dysgonomonas, and Tannerella (Garrity GM, Bell JA, Liburn T (2005) The revised road map to the manual. In: Brenner DJ, Krieg NR, Staley JT (eds) Bergey’s Manual of Systematic Bacteriology, The Proteobacteria, Part A, Introductory Essays, vol 2. 2nd edn New York, Springer pp 159–206). This family comprises five monospecific genera represented by Macellibacteroides fermentans, Paludibacter propionicigenes, Petrimonas sulfuriphila, Proteiniphilum acetatigenes, and Tannerella forsythia. Macellibacteroides fermentans and Parabacteroides chartae are phylogenetically highly related and should be considered strains of the same species, with Macellibacteroides fermentans having page priority. Members of the family are defined by a variety of cellular morphologies and chemotaxonomic characteristics. Many species of the family Porphyromonadaceae are part of the indigenous microbiota of the human and animal gastrointestinal tract and oral cavity, but some species in this family are commonly associated with a variety of human and animal infections.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 699.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Hardcover Book
USD 849.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  • Aldridge KE, Ashcraft D, Cambre K, Pierson CL, Jenkins SG, Rosenblatt JE (2001) Multicenter survey of the changing in vitro antimicrobial susceptibilities of clinical isolates of Bacteroides fragilis group, Prevotella, Fusobacterium, Porphyromonas, and Peptostreptococcus species. Antimicrob Agents Chemother 45:1238–1243

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Balch WE, Fox GE, Magrum LJ, Woese CR, Wolfe RS (1979) Methanogens: reevaluation of a unique biological group. Microbiol Rev 43:260–296

    CAS  PubMed Central  PubMed  Google Scholar 

  • Braham PH, Moncla BJ (1992) Rapid presumptive identification and further characterization of Bacteroides forsythus. J Clin Microbiol 30:649–654

    CAS  PubMed Central  PubMed  Google Scholar 

  • Brondz I, Olsen I (1991) Multivariate analyses of cellular fatty acids in Bacteroides, Prevotella, Porphyromonas, Wolinella, and Campylobacter spp. J Clin Microbiol 29:183–189

    CAS  PubMed Central  PubMed  Google Scholar 

  • Chen S, Dong X (2005) Proteiniphilum acetatigenes gen. nov., sp. nov., from a UASB reactor treating brewery wastewater. Int J Syst Evol Microbiol 55:2257–2261

    Article  CAS  PubMed  Google Scholar 

  • Collins MD, Love DN, Karjalainen J, Kanervo A, Forsblom B, Willems A, Stubbs S, Sarkiala E, Bailey GD, Wigney DI, Jousimies-Somer H (1994) Phylogenetic analysis of members of the genus Porphyromonas and description of Porphyromonas cangingivalis sp. nov. and Porphyromonas cansulci sp. nov. Int J Syst Bacteriol 44:674–679

    Article  CAS  PubMed  Google Scholar 

  • Conrads G, Citron DM, Tyrrell KL, Horz HP, Goldstein EJC (2005) 16S-23S rRNA gene internal transcribed spacer sequences for analysis of the phylogenetic relationships among species of the genus Porphyromonas. Int J Syst Evol Microbiol 55:607–613

    Article  CAS  PubMed  Google Scholar 

  • Daneshvar MI, Hollis DG, Moss CW (1991) Chemical characterization of clinical isolates which are similar to CDC group DF-3 bacteria. J Clin Microbiol 29:2351–2353

    CAS  PubMed Central  PubMed  Google Scholar 

  • Eggerth AH, Gagnon BH (1933) J Bacteriol 25:389–413

    CAS  PubMed Central  PubMed  Google Scholar 

  • Finegold SM, Barnes EM (1977) Int J Syst Bacteriol 27:388–391

    Article  Google Scholar 

  • Finegold SM, Väisänen ML, Rautio M, Eerola E, Summanen P, Molitoris D, Song Y, Liu C, Jousimies-Somer H (2004) Porphyromonas uenonis sp. nov., a pathogen for human distinct from P. asaccharolytica and P. endodontalis. J Clin Microbiol 42:5298–5301

    Article  PubMed Central  PubMed  Google Scholar 

  • Fournier D, Mouton C, Lapierre P, Kato T, Ménard C (2001) Porphyromnoas gulae sp. nov., an anaerobic, Gram-negative coccobacillus from the gingival sulcus of various animal hosts. Int J Syst Evol Microbiol 51:1179–1189

    Article  CAS  PubMed  Google Scholar 

  • Garrity GM, Bell JA, Liburn T (2005) The revised road map to the manual. In: Brenner DJ, Krieg NR, Staley JT (eds) The Proteobacteria, Part A, introductory essays, vol 2, 2nd edn, Bergey’s manual of systematic bacteriology. Springer, New York, pp 159–206

    Google Scholar 

  • Grabowski A, Tindall BJ, Bardin V, Blanchet D, Jeanthon C (2005) Petrimonas sulfuriphila gen. nov., sp. nov., a mesophilic fermentative bacterium isolated from a biodegraded oil reservoir. Int J Syst Evol Microbiol 55:1113–1121

    Article  CAS  PubMed  Google Scholar 

  • Gronow S, Munk C, Lapidus A, Nolan M, Lucas S et al (2011) Complete genome sequence of Paludibacter propionicigenes type strain (WB4T). Standards Genom Sci 4:36–44

    Article  CAS  Google Scholar 

  • Hansen PS, Jensen TG, Gahrn-Hansen B (2005) Dysgonomonas capnocytophagoides bacteraemia in a neutropenic patient treated for acute myeloid leukaemia. APMIS 113:229–231

    Article  PubMed  Google Scholar 

  • Hardham JM, King KW, Dreier K, Wong J, Strietzel C, Eversole RR, Sfintescu C, Evans RT (2008) Transfer of Bacteroides splanchnicus to Odoribacter gen. nov. as Odoribacter splanchnicus comb. nov., and description of Odoribacter denticanis sp. nov., isolated from the crevicular spaces of canine periodontitis patients. Int J Syst Evol Microbiol 58:103–109

    Article  CAS  PubMed  Google Scholar 

  • Hofstad T, Olsen I, Eribe ER, Falsen E, Collins MD, Lawson PA (2000) Dysgonomonas gen. nov. to accommodate Dysgonomonas gadei sp. nov., an organism isolated from a human gall bladder, and Dysgonomonas capnocytophagoides (formerly CDC group DF-3). Int J Syst Evol Microbiol 50:2189–2195

    Article  CAS  PubMed  Google Scholar 

  • Holdeman LV, Cato EP, Moore WEC (1977) Anaerobe laboratory manual, 4th edn. Virginia Polytechnic Institute and State University, Blacksburg

    Google Scholar 

  • Holdeman LV, Moore WEC (1970) in Cato EP, Cummins CS, Holdeman LV, Johnson JL, Moore WEC, Smibert RM, Smith LDS (eds) Outline of clinical methods in anaerobic bacteriology, 2nd revision. Virginia Polytechnic Institute, Anaerobe Laboratory, Blacksburg, Virginia. pp. 33–44

    Google Scholar 

  • Jabari L, Gannoun H, Cayol JL, Hedi A, Sakamoto M, Falsen E, Ohkuma M, Hamdi M, Fauque G, Ollivier B, Fardeau ML (2012) Macellibacteroides fermentans gen. nov., a member of the family Porphyromonadaceae isolated from an upflow anaerobic filter treating abattoir wastewaters. Int J Syst Evol Microbiol 62:2522–2527

    Article  CAS  PubMed  Google Scholar 

  • Jousimies-Somer HR, Summanen P, Citron DM, Baron EJ, Wexler HM, Finegold SM (2002) Wadsworth-KTL anaerobic bacteriology manual. Star Publishing Company, Belmont

    Google Scholar 

  • Judicial Commission of the International Committee on Systematics of Prokaryotes (2008) The adjectival form of the epithet in Tannerella forsythensis Sakamoto et al. 2002 is to be retained and the name is to be corrected to Tannerella forsythia Sakamoto et al. 2002. Opinion 85. Int J Syst Evol Microbiol 58:1974

    Article  Google Scholar 

  • Kodama Y, Shimoyama T, Watanabe K (2012) Dysgonomonas oryzarvi. sp. nov., isolated from a microbial fuel cell. Int J Syst Evol Microbiol 62:3055–3059

    Article  CAS  PubMed  Google Scholar 

  • Koneman EW, Allen SD, Janda WM, Shreckenberger PC, Winn WC Jr (1997) CDC group DF-3. In: Color Atlas and textbook of diagnostic microbiology. Lippincott, Philadelphia, pp 413–414

    Google Scholar 

  • Könönen E, Väisänen ML, Finegold SM, Heine R, Jousimer-Somer H (1996) Cellular fatty acid analysis and enzyme profiles of Porphyromonas catoniae—a frequent colonizer of the oral cavity in children. Anaerobe 2:329–335

    Article  Google Scholar 

  • Krieg NR (2011) Family IV. Porphyromonadaceae fam. nov. In: Krieg NR, Staley JT, Brown DR, Hedlund BP, Paster BJ, Ward NL, Ludwig W, Whitman WB (eds) The Bacteroidetes, Spirochaetes, Tenericutes (Mollicutes), Acidobacteria, Fibrobacteres, Fusobacteria, Dictyoglomi, Gemmatimonadetes, Lentisphaerae, Verrucomicrobia, Chlamydiae, and Planctomycetes, vol 4, 2nd edn, Bergey’s manual of systematic bacteriology. Springer, New York, p 61

    Google Scholar 

  • Lakhssassi N, Elhajoui N, Lodter JP, Pineill JL, Sixou M (2005) Antimicrobial susceptibility variation of 50 anaerobic periopathogens in aggressive periodontitis: an interindividual variability study. Oral Microbiol Immunol 20:244–252

    Article  CAS  PubMed  Google Scholar 

  • Lawson PA, Falsen E, Inganäs E, Weyant RS, Collins MD (2002) Dysgonomonas mossi sp. nov., from human sources. Syst Appl Microbiol 25:194–197

    Article  CAS  PubMed  Google Scholar 

  • Lawson PA, Carlson P, Wernersson S, Moore ERB, Falsen E (2010) Dysgonomonas hofstadii sp. nov., isolated from a human clinical source. Anaerobe 16:161–164

    Article  CAS  PubMed  Google Scholar 

  • Love DN, Bailey GD, Collings S, Briscoe DA (1992) Description of Porphyromonas circumdentaria sp. nov. and reassignment of Bacteroides salivosus (Love, Johnson, Jones, and Calverley 1987) as Porphyromonas (Shah and Collins 1988) salivosa comb. nov. Int J Syst Bacteriol 42:434–438

    Article  CAS  PubMed  Google Scholar 

  • Love DN, Karjalainen J, Kanervo A, Forsblom B, Sarkiala E, Bailey GD, Wigney DI, Jousimies-Somer H (1994) Porphyromonas canoris sp. nov., an asaccharolytic, black-pigmented species from the gingival sulcus of dogs. Int J Syst Bacteriol 44:204–208

    Article  CAS  PubMed  Google Scholar 

  • Maiden MFJ, Cohee P, Tanner ACR (2003) Proposal to conserve the adjectival form of the specific epithet in the reclassification of Bacteroides forsythus Tanner et al. 1986 to the genus Tannerella Sakamoto et al. 2002 as Tannerella forsythia corrig., gen. nov., comb. nov. request for an opinion. Int J Syst Evol Microbiol 53:2111–2112

    Article  CAS  PubMed  Google Scholar 

  • Morotomi M, Nagai F, Sakon H, Tanaka R (2008) Dialister succinatiphilus sp. nov. and Barnesiella intestinihominis sp. nov., isolated from human faeces. Int J Syst Evol Microbiol 58:2716–2720

    Article  CAS  PubMed  Google Scholar 

  • Nagai F, Morotomi M, Watanabe Y, Sakon H, Tanaka R (2010) Alistipes indistinctus sp. nov. and Odoribacter laneus sp. nov., common members of the human intestinal microbiota isolated from faeces. Int J Syst Evol Microbiol 60:1296–1302

    Article  CAS  PubMed  Google Scholar 

  • Naito M, Hirakawa H, Yamashita A, Ohara N, Shoji M et al (2008) Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis. DNA Res 15:215–225

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Nelson KE, Fleischmann RD, DeBoy RT, Paulsen IT, Fouts DE et al (2003) Complete genome sequence of the oral pathogenic bacterium Porphyromonas gingivalis strain W83. J Bacteriol 185:5591–5601

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Sakamoto M, Benno Y (2006) Reclassification of Bacteroides distasonis, Bacteroides goldsteinii and Bacteroides merdae as Parabacteroides distasonis gen. nov., comb. nov., Parabacteroides goldsteinii comb. nov. and Parabacteroides merdae comb. nov. Int J Syst Evol Microbiol 56:1599–1605

    Article  CAS  PubMed  Google Scholar 

  • Sakamoto M, Ohkuma M (2013) Porphyromonas crevioricanis is an earlier heterotypic synonym of Porphyromonas cansulci and has priority. Int J Syst Evol Microbiol 63:454–457

    Article  CAS  PubMed  Google Scholar 

  • Sakamoto M, Suzuki M, Umeda M, Ishikawa I, Benno Y (2002) Reclassification of Bacteroides forsythus (Tanner et al. 1986) as Tannerella forsythensis corrig., gen. nov. Int J Syst Evol Microbiol 52:841–849

    Article  CAS  PubMed  Google Scholar 

  • Sakamoto M, Kitahara M, Benno Y (2007a) Parabacteroides johnsonii sp. nov., isolated from human faeces. Int J Syst Evol Microbiol 57:293–296

    Article  CAS  PubMed  Google Scholar 

  • Sakamoto M, Lan PTN, Benno Y (2007b) Barnesiella viscericola gen. nov., sp. nov., a novel member of the family Porphyromonadaceae isolated from chicken caecum. Int J Syst Evol Microbiol 57:342–346

    Article  CAS  PubMed  Google Scholar 

  • Sakamoto M, Takagaki A, Matsumoto K, Kato Y, Goto K, Benno Y (2009a) Butyricimonas synergistica gen. nov., sp. nov. and Butyricimonas virosa sp. nov., butyric acid-producing bacteria in the family ‘Porphyromonadaceae’ isolated from rat faeces. Int J Syst Evol Microbiol 59:1748–1753

    Article  CAS  PubMed  Google Scholar 

  • Sakamoto M, Suzuki N, Matsunaga N, Koshihara K, Seki M, Komiya H, Benno Y (2009b) Parabacteroides gordonii sp. nov., isolated from human blood cultures. Int J Syst Evol Microbiol 59:2843–2847

    Article  CAS  PubMed  Google Scholar 

  • Shah HN, Collins MD (1988) Proposal for reclassification of Bacteroides asaccharolyticus, Bacteroides gingivalis, and Bacteroides endodontalis in a new genus, Porphyromonas. Int J Syst Bacteriol 38:128–131

    Article  CAS  Google Scholar 

  • Shan HN, Olsen I, Bernard K, Finegold SM, Gharbia S et al (2009) Approaches to the study of the systematics of anaerobic, Gram-negative, non-sporeforming rods: current status and perspectives. Anaerobe 15:179–194

    Article  Google Scholar 

  • Stamatakis A (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinfomatics 22:2688–2690

    Article  CAS  Google Scholar 

  • Summanen PH, Durmaz B, Väisänen M-L, Liu C, Molitoris D, Eerola E, Helander IM, Finegold SM (2005) Porphyromonas somerae sp. nov., a pathogen isolated from humans and distinct from Porphyromonas levii. J Clin Microbiol 43:4455–4459

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Summanen PH, Lawson PA, Finegold SM (2009) Porphyromonas bennonis sp. nov., isolated from human clinical specimens. Int J Syst Evol Microbiol 59:1727–1732

    Article  CAS  PubMed  Google Scholar 

  • Takemoto T, Kurihara H, Dahlen G (1997) Characterization of Bacteroides forsythus isolates. J Clin Microbiol 35:1378–1381

    CAS  PubMed Central  PubMed  Google Scholar 

  • Tan H-Q, Li T-T, Zhu C, Zhang X-Q, Wu M, Zhu X-F (2012) Parabacteroides chartae sp. nov., an obligately anaerobic species from wastewater of a paper mill. Int J Syst Evol Microbiol 62:2613–2617

    Article  CAS  PubMed  Google Scholar 

  • Tanner ACR, Haffer C, Bratthall GT, Visconti RA, Socransky SS (1979) A study of the bacteria associated with advancing periodontitis in man. J Clin Periodontol 6:278–307

    Article  CAS  PubMed  Google Scholar 

  • Tanner ACR, Listgarten MA, Ebersole JL, Strezempko MN (1986) Bacteroides forsythus sp. nov., a slow-growing, fusiform Bacteroides sp. from the human oral cavity. Int J Syst Bacteriol 36:213–221

    Article  CAS  Google Scholar 

  • Ueki A, Akasaka H, Suzuki D, Ueki K (2006) Paludibacter propionicigenes gen. nov., sp. nov., a novel strictly anaerobic, Gram-negative, propionate-producing bacterium isolated from plant residue in irrigated rice-field soil in Japan. Int J Syst Evol Microbiol 56:39–44

    Article  CAS  PubMed  Google Scholar 

  • Wallace PL, Hollis DG, Weaver RE, Moss CW (1989) Characterization of CDC group DF-3 by cellular fatty analysis. J Clin Microbiol 27:735–757

    CAS  PubMed Central  PubMed  Google Scholar 

  • Watanabe T, Maruyama F, Nozawa T, Aoki A, Okano S et al (2011) Complete genome sequence of the bacterium Porphyromonas gingivalis TDC60, which causes periodontal disease. J Bacteriol 193:4259–4260

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Werner H, Rintelen G, Kunstek-Santos H (1975) Zentralblatt fur Bakteriologie, Parasitenkunde, Infektionskrankheiten und Hygiene. Abteilung I. 231:133–144

    CAS  Google Scholar 

  • Willems A, Collins MD (1995) Reclassification of Oribaculum catoniae (Moore and Moore 1994) as Porphyromonas catoniae comb. nov. and emendation of the genus Porphyromonas. Int J Syst Bacteriol 45:578–581

    Article  CAS  PubMed  Google Scholar 

  • Wyss C (1989) Dependence of proliferation of Bacteroides forsythus on exogenous N-acetylmuramic acid. Infect Immun 57:1757–1759

    CAS  PubMed Central  PubMed  Google Scholar 

  • Xu J, Mahowald MA, Ley RE, Lozupone CA, Hamady M et al (2007) Evolution of symbiotic bacteria in the distal human intestine. PLoS Biol 5:e156

    Article  PubMed Central  PubMed  Google Scholar 

  • Yarza et al. (2012) http://www.arb-silva.de/documentation/release-108/.

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Mitsuo Sakamoto .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2014 Springer-Verlag Berlin Heidelberg

About this entry

Cite this entry

Sakamoto, M. (2014). The Family Porphyromonadaceae . In: Rosenberg, E., DeLong, E.F., Lory, S., Stackebrandt, E., Thompson, F. (eds) The Prokaryotes. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-38954-2_132

Download citation

Publish with us

Policies and ethics