Skip to main content

Understanding Nature Through the Symbiosis of Information Science, Bioinformatics, and Neuroinformatics

  • Chapter
Springer Handbook of Bio-/Neuroinformatics

Part of the book series: Springer Handbooks ((SHB))

  • 7356 Accesses

Abstract

This chapter presents some background information, methods, and techniques of information science, bio- and neuroinformatics in their symbiosis. It explains the rationale, motivation, and structure of the Handbook that reflects on this symbiosis. For this chapter, some text and figures from [1.1] have been used. As the introductory chapter, it gives a brief overview of the topics covered in this Springer Handbook of Bio-/Neuroinformatics with emphasis on the symbiosis of the three areas of science concerned: information science (informatics) (IS), bioinformatics (BI), and neuroinformatics (NI). The topics presented and included in this Handbook provide a far from exhaustive coverage of these three areas, but they clearly show that we can better understand nature only if we utilize the methods of IS, BI, and NI, considering their integration and interaction.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 269.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Hardcover Book
USD 349.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Abbreviations

3-D:

three-dimensional

ANN:

artificial neural network

BI:

bioinformatics

DNA:

deoxyribonucleic acid

EC:

evolutionary computation

EEG:

electroencephalography

GA:

genetic algorithm

HMM:

hidden Markov model

IF:

initiation factor

IS:

information science

LDA:

linear discriminant analysis

MEG:

magnetoencephalography

MLR:

multiple linear regression

NDEI:

nondimensional error index

NI:

neuroinformatics

PCA:

principle component analysis

RMSE:

root mean squared error

RNA:

ribonucleic acid

SNR:

signal-to-noise ratio

SVM:

support vector machine

fMRI:

functional magnetic resonance imaging

log:

logistic regression

mRNA:

messenger RNA

References

  1. N. Kasabov: Evolving Connectionist Systems: The Knowledge Engineering Approach (Springer, London 2007)

    MATH  Google Scholar 

  2. R.P. Feynman, R.B. Leighton, M. Sands: The Feynman Lectures on Physics (Addison-Wesley, Redding 1965)

    MATH  Google Scholar 

  3. R. Penrose: The Emperorʼs New Mind (Oxford Univ. Press, Oxford 1989)

    Google Scholar 

  4. R. Penrose: Shadows of the Mind. A Search for the Missing Science of Consciousness (Oxford Univ. Press, Oxford 1994)

    MATH  Google Scholar 

  5. C.P. Williams, S.H. Clearwater: Explorations in Quantum Computing (Springer, Berlin 1998)

    MATH  Google Scholar 

  6. M. Brooks: Quantum Computing and Communications (Springer, Berlin, Heidelberg 1999)

    Book  MATH  Google Scholar 

  7. D.S. Dimitrov, I.A. Sidorov, N. Kasabov: Computational biology. In: Handbook of Theoretical and Computational Nanotechnology, Vol. 1, ed. by M. Rieth, W. Sommers (American Scientific Publisher, New York 2004), Chap. 21

    Google Scholar 

  8. N. Kasabov, L. Benuskova: Computational neurogenetics, Int. J. Theor. Comput. Nanosci. 1(1), 47–61 (2004)

    Article  Google Scholar 

  9. F. Rosenblatt: Principles of Neurodynamics (Spartan Books, New York 1962)

    MATH  Google Scholar 

  10. W. Freeman: Neurodynamics (Springer, London 2000)

    MATH  Google Scholar 

  11. M. Arbib (Ed.): The Handbook of Brain Theory and Neural Networks (MIT, Cambridge 2003)

    MATH  Google Scholar 

  12. H. Chin, S. Moldin (Eds.): Methods in Genomic Neuroscience (CRC, Boca Raton 2001)

    Google Scholar 

  13. J.J. Hopfield: Neural networks and physical systems with emergent collective computational abilities, Proc. Natl. Acad. Sci. USA 79, 2554–2558 (1982)

    Article  MathSciNet  Google Scholar 

  14. National Center for Biotechnology Information (US): Genes and Disease [Internet] (NCBI, Bethesda 1998), available online at http://www.ncbi.nlm.nih.gov/books/NBK22183/

    Google Scholar 

  15. L.R. Rabiner: A tutorial on hidden Markov models and selected applications in speech recognition, Proc. IEEE 77(2), 257–285 (1989)

    Article  Google Scholar 

  16. S. Grossberg: On learning and energy – Entropy dependence in recurrent and nonrecurrent signed networks, J. Stat. Phys. 1, 319–350 (1969)

    Article  MathSciNet  Google Scholar 

  17. D.E. Rumelhart, G.E. Hinton, R.J. Williams (Eds.): Learning internal representations by error propagation. In: Parallel Distributed Processing: Explorations in the Microstructure of Cognition (MIT/Bradford, Cambridge 1986)

    Google Scholar 

  18. T. Kohonen: Self-Organizing Maps (Springer, Berlin, Heidelberg 1997)

    Book  MATH  Google Scholar 

  19. S. Haykin: Neural Networks – A Comprehensive Foundation (Prentice Hall, Engelwood Cliffs, 1994)

    MATH  Google Scholar 

  20. C. Bishop: Neural Networks for Pattern Recognition (Oxford Univ. Press, Oxford 1995)

    MATH  Google Scholar 

  21. N. Kasabov: Foundations of Neural Networks, Fuzzy Systems and Knowledge Engineering (MIT, Cambridge 1996)

    MATH  Google Scholar 

  22. S. Amari, N. Kasabov: Brain-like Computing and Intelligent Information Systems (Springer, New York 1998)

    MATH  Google Scholar 

  23. D. Hebb: The Organization of Behavior (Wiley, New York 1949)

    Google Scholar 

  24. X. Yao: Evolutionary artificial neural networks, Int. J. Neural Syst. 4(3), 203–222 (1993)

    Article  Google Scholar 

  25. D.B. Fogel: Evolutionary Computation – Toward a New Philosophy of Machine Intelligence (IEEE, New York 1995)

    MATH  Google Scholar 

  26. V. Vapnik: Statistical Learning Theory (Wiley, New York 1998)

    MATH  Google Scholar 

  27. Z.A. Zadeh: Fuzzy sets, Inf. Control 8, 338–353 (1965)

    Article  MathSciNet  MATH  Google Scholar 

  28. T. Yamakawa, H. Kusanagi, E. Uchino, T. Miki: A new effective algorithm for neo fuzzy neuron model, Proc. Fifth IFSA World Congress (IFSA, 1993) pp. 1017–1020

    Google Scholar 

  29. N. Kasabov: Global, local and personalized modeling and profile discovery in Bioinformatics: An integrated approach, Pattern Recognit. Lett. 28(6), 673–685 (2007)

    Article  Google Scholar 

  30. M. Watts: A decade of Kasabovʼs evolving connectionist systems: A review, IEEE Trans. Syst. Man Cybern. C 39(3), 253–269 (2009)

    Article  Google Scholar 

  31. Q. Song, N. Kasabov: TWNFI – Transductive neural-fuzzy inference system with weighted data normalization and its application in medicine, IEEE Trans. Fuzzy Syst. 19(10), 1591–1596 (2006)

    MATH  Google Scholar 

  32. L. Benuskova, N. Kasabov: Computational Neuro-Genetic Modeling (Springer, New York 2007)

    Book  Google Scholar 

  33. http://www.wikipedia.org (last accessed April 4 2012)

  34. A.L. Hodgkin, A.F. Huxley: A quantitative description of membrane current and its application to conduction and excitation in nerve, J. Physiol. 117, 500–544 (1952)

    Article  Google Scholar 

  35. W. McCullock, W. Pitts: A logical calculus of the ideas immanent in nervous activity, Bull. Math. Biophys. 5, 115–133 (1943)

    Article  MathSciNet  MATH  Google Scholar 

  36. W. Gerstner: Time structure of the activity of neural network models, Phys. Rev. 51, 738–758 (1995)

    Google Scholar 

  37. E. Izhikevich: Simple model of spiking neurons, IEEE Trans. Neural Netw. 14(6), 1569–1572 (2003)

    Article  MathSciNet  Google Scholar 

  38. N. Kasabov, L. Benuskova, S. Wysoski: A Computational Neurogenetic Model of a Spiking Neuron, IJCNN 2005 Conf. Proc., Vol. 1 (IEEE, New York 2005) pp. 446–451

    Google Scholar 

  39. N. Kasabov, R. Schliebs, H. Kojima: Probabilistic computational neurogenetic framework: From modeling cognitive systems to Alzheimerʼs disease, IEEE Trans. Auton. Ment. Dev. 3(4), 1–12 (2011)

    Article  Google Scholar 

  40. N. Kasabov: To spike or not to spike: A probabilistic spiking neuron model, Neural Netw. 23(1), 16–19 (2010)

    Article  Google Scholar 

  41. G. Kistler, W. Gerstner: Spiking Neuron Models – Single Neurons, Populations, Plasticity (Cambridge Univ. Press, Cambridge 2002)

    MATH  Google Scholar 

  42. W. Maass, C.M. Bishop (Eds.): Pulsed Neural Networks (MIT, Cambridge 1999)

    MATH  Google Scholar 

  43. S. Thorpe, A. Delorme, R. Van Rullen: Spike-based strategies for rapid processing, Neural Netw. 14(6/7), 715–725 (2001)

    Article  Google Scholar 

  44. S. Wysoski, L. Benuskova, N. Kasabov: Evolving spiking neural networks for audiovisual information processing, Neural Netw. 23(7), 819–835 (2010)

    Article  Google Scholar 

  45. S. Guen, S. Rotter (Eds.): Analysis of Parallel Spike Trains (Springer, New York 2010)

    Google Scholar 

  46. E. Rolls, A. Treves: Neural Networks and Brain Function (Oxford Univ. Press, Oxford 1998)

    Google Scholar 

  47. J.G. Taylor: The Race for Consciousness (MIT, Cambridge 1999)

    Google Scholar 

  48. R. Koetter (Ed.): Neuroscience Databases: A Practical Guide (Springer, Berlin, Heidelberg 2003)

    Google Scholar 

  49. D. Tan, A. Nijholt (Eds.): Brain-Computer Interfaces (Springer, London 2010)

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Nikola Kasabov .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2014 Springer-Verlag

About this chapter

Cite this chapter

Kasabov, N. (2014). Understanding Nature Through the Symbiosis of Information Science, Bioinformatics, and Neuroinformatics. In: Kasabov, N. (eds) Springer Handbook of Bio-/Neuroinformatics. Springer Handbooks. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-30574-0_1

Download citation

  • DOI: https://doi.org/10.1007/978-3-642-30574-0_1

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-30573-3

  • Online ISBN: 978-3-642-30574-0

  • eBook Packages: EngineeringEngineering (R0)

Publish with us

Policies and ethics