Skip to main content

The Crystallization of Calcium Oxalate Hydrates Formed by Interaction Between Microorganisms and Minerals

  • Conference paper
  • First Online:
Biogenic—Abiogenic Interactions in Natural and Anthropogenic Systems

Abstract

The work is devoted to the research of the interactions between microorganisms, rocks and minerals in simulation experiment conditions. Bacteria and microscopic fungi isolated from different types of rocks were studied as agents of biomineralization processes on the mineral surface in moist chamber and in liquid medium. The formation of calcium oxalates under the influence of fungi (Aspergillus and Penicillium) and bacteria (Bacillus) was observed on the surface of different calcium-bearing minerals: carbonates, phosphates, silicates. The obtained results allow to compare the role of microorganism metabolism, peculiarities of the stone substratum and the experimental conditions (the role of the environment) in calcium oxalate crystallization. It was shown that it is a complicated multifactor process. The metabolic activity of microorganisms affects the morphogenesis of the forming oxalates which can be explained by the difference in solubility of stone substrates in various metabolites. The results of simulation experiments showed that the metabolism of the microbial community is an important factor of secondary mineralization on the surface of rocks and minerals. The present results give a scientific basis for creating new methods for cultural heritage stone monument preservation with the use of modern biotechnologies.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 169.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 219.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  • Adeyemi AO, Gadd GM (2005) Fungal degradation of calcium-, lead- and silicon-bearing minerals. Biometals 18:269–281

    Article  Google Scholar 

  • Barinova KV, Vlasov DYu, Schiparev SM, Zelenskaya MS, Rusakov AV, Frank-Kamenetskaya OV (2010) Production of organic acids by micromycetes from the rock substrates. Mycol Phythopathology 44(2):137–142 (in Russian)

    Google Scholar 

  • Binbin MJ, Bin L (2011) Interactions between Bacillus mucilaginosus and silicate minerals (weathered adamellite and feldspar): weathering rate, products, and reaction mechanisms. Chin J Geochem 30:187–192

    Article  Google Scholar 

  • Bonaventura MP, Gallo MD, Cacchio P, Ercole C, Lepidi A (1999) Microbial formation of oxalate films on monument surfaces: bioprotection or biodeterioration. Geomicrobiol J 16:55–64

    Article  Google Scholar 

  • Burford EP, Kierans M, Gadd GM (2003) Geomycology: fungi in mineral substrata. Mycologist 17:98–107

    Article  Google Scholar 

  • Burford EP, Hillier S, Gadd GM (2006) Biomineralization of fungal hyphae with calcite (CaCO3) and calcium oxalate mono- and dihydrate in carboniferous limestone microcosms. Geomicrobiol J 23:599–611

    Article  Google Scholar 

  • Chen L, Xie A, Jia R, Shen Y, Tang W, Li C (2007) Influence of Bacillus subtilis on the growth of calcium oxalate. Cryst Res Technol 42(9):881–885

    Article  Google Scholar 

  • de la Torre MA, Gomez-Alarcon G, Palacios JM (1993a) “In vitro” biofilm formation by Penicillium frequentans strains on sandstone, granite, and limestone. Appl Microbiol Biotechnol 40:408–415

    Article  Google Scholar 

  • de la Torre MA, Gomez-Alarcon G, Vizcaino C, Garcia MT (1993b) Biochemical mechanisms of stone alteration carried out by filamentous fungi living in monuments. Biogeochemistry 19:129–147

    Article  Google Scholar 

  • de Oliveira PB, de la Rosa JM, Miller AZ, Saiz-Jimenez C, Gomez-Bolea A, Sequeira Braga M, A Dionısio A (2001) An integrated approach to assess the origins of black films on a granite monument. Environ Earth Sci 63: 1677–1690

    Google Scholar 

  • Ehrlich HL (1999) Microbes as geologic agents: their role in mineral formation. Geomicrobiol J 16:135–153

    Article  Google Scholar 

  • Frank-Kamenetskaya OV, Vlasov DYu, Zelenskaya MS, Knauf IV, Timasheva MA (2009) Decaying of the marble and limestone monuments in the urban environment. Case studies from Saint Petersburg, Russia. Studia Universitatis Babes-Bolyai Geologia 54(2):17–22

    Google Scholar 

  • Frank-Kamenetskaya O, Rusakov A, Barinova K, Zelenskaya M, Vlasov D (2012a) The formation of oxalate patina on the surface of carbonate rocks under influence of microorganisms. In: Broekmans MATM (ed) Proceedings of the 10th international congress of applied mineralogy (ICAM-2011). Springer, Berlin

    Google Scholar 

  • Frank-Kamenetskaya OV, Vlasov DY, Shilova OA (2012b) Biogenic crystals genesis on a carbonate rock monument surface: the main factors and mechanisms, the development of nanotechnological ways of inhibition. In: Krivovichev S (ed) Minerals as advanced materials II. Springer, Berlin

    Google Scholar 

  • Gadd GM (1999) Fungal production of citric and oxalic acid: importance in metal speciation, physiology and biogeochemical processes. Adv Microb Physiol 41:47–91

    Article  Google Scholar 

  • Gadd GM (2007) Geomycology: biogeochemical transformations of rocks, minerals, metals and radionuclides by fungi, bioweathering and bioremediation. Mycol Res 111:3–49

    Article  Google Scholar 

  • Girgis MGZ, Khalil HMA, Sharaf MS (2008) In vitro evaluation of rock phosphate and potassium solubilizing potential of some bacillus strains. Aust J Basic Appl Sci 2(1):68–81

    Google Scholar 

  • Izatulina A, Gurzhiy V, Frank-Kamenetskaya OV (2014) Weddellite from renal stones: structure refinement and dependence of crystal chemical features on H2O content. Am Mineral 99:2–7

    Article  Google Scholar 

  • Kolo K, Keppens E, Preat A, Claeys P (2007) Experimental observations on fungal diagenesis of carbonate substrates. J Geophys Res 112:G01007

    Article  Google Scholar 

  • Kuis LV, Markevich RM (2008) The organic acid accumulation in the cultural liquid of bacterium of Bacillus genera. Trudi BGTU. Seria 4: Himia I tehnologia organucheskih veshestv 4(1):195–198

    Google Scholar 

  • Magnuson JK, Lasure LL (2004) Organic acid production by filamentous fungi. In: Tkacz JS, Lange L (Eds) Advances in fungal biotechnology for industry, agriculture, and medicine. Springer Science+Business Media, New York

    Google Scholar 

  • Martin G, Guggiari M, Bravo D, Zopfi J, Cailleau G, Aragno M, Job D, Verrecchia E, Junier P (2012) Fungi, bacteria and soil pH: the oxalate-carbonate pathway as a model for metabolic interaction. Environ Microbiol 44:2960–2970

    Article  Google Scholar 

  • Monte M (2003a) Oxalate films formation on marble specimens caused by fungus. J Cult Heritage 4:255–258

    Article  Google Scholar 

  • Monte M (2003b) Biogenesis of oxalate patinas on marble specimens in fungal culture. Aerobiologia 19:271–275

    Article  Google Scholar 

  • Pinna D (1993) Fungal physiology and the formation of calcium oxalate films on stone monuments. Aerobiologia 9:157–167

    Article  Google Scholar 

  • Pinzari F, Tate J, Bicchieri M, Rhee YJ, Gadd GM (2013) Biodegradation of ivory (natural apatite): possible involvement of fungal activity in biodeterioration of the Lewis Chessmen. Environ Microbiol 15(4):1050–1062

    Article  Google Scholar 

  • Prieto B, Silva B (2003) Neoformed calcium minerals in granite colonized by lichens. Nova Acta Cientifica Compostelana (Bioloxia) 13:35–45

    Google Scholar 

  • Rosseeva E, Frank-Kamenetskaya O, Vlasov D, Zelenskaya M, Sazanova K, Rusakov A, Kniep R (2015) Crystallization of calcium oxalate hydrates by interaction of calcite marble with fungus Aspergillus Niger. Am Mineral, 100(8)

    Google Scholar 

  • Rousakov AV, Frank-Kamenetskaya OV, Zelenskaya MS, Vlasov DYu, Gimelbrand DE, Knauf IV, Plotkina JV (2010) The first find of calcium oxalates in biofilms on the surface of archeological monuments of Tauric Chersonesos limestone (Crimea, Ukraine). Russian Mineral Soc Notes 5:100–108 (in Russian)

    Google Scholar 

  • Sahin N (2003) Oxalotrophic bacteria. Res Microbiol 154:399–407

    Article  Google Scholar 

  • Sterflinger K (2000) Fungi as geological agents. Geomicrobiol J 17:97–124

    Article  Google Scholar 

  • Thomas A (2009) Biomimetic growth and morphology control of calcium oxalates. Dissertation (PhD thesis), TU Dresden, Germany

    Google Scholar 

  • Thomas A, Rosseeva E, Hochrein O, Carrillo-Cabrera W, Simon P, Duchstein P, Zahn D, Kniep R (2012) Mimicking the growth of a pathologic biomineral: shape development and structures of calcium oxalate dihydrate in the presence of polyacrylic acid. Chem Eur J 18:4000–4009

    Article  Google Scholar 

  • Verrecchia EP, Braissant O, Cailleae G (2006) The oxalate-carbonate pathway in soil storage: the role of fungi and oxalotrophic bacteria. In: Fungi Biogeochem Cycles, Cambridge University Press, Cambridge

    Google Scholar 

  • Vlasov DY, Frank-Kametskaya OV (2006) Natural rock decaying in the urban environment. In: Gavrilenko VG, Panova EN (eds) Transactions of Saint Petersburg naturalist society, vol 96. St. Petersburg State University publisher, Saint-Petersburg

    Google Scholar 

  • Zuzuk FV (2003) Urinary calculus mineralogy. Volynsk State Universit Luzk 2:507 (in Ukranian)

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Aleksei V. Rusakov .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2016 Springer International Publishing Switzerland

About this paper

Cite this paper

Rusakov, A.V., Vlasov, A.D., Zelenskaya, M.S., Frank-Kamenetskaya, O.V., Vlasov, D.Y. (2016). The Crystallization of Calcium Oxalate Hydrates Formed by Interaction Between Microorganisms and Minerals. In: Frank-Kamenetskaya, O., Panova, E., Vlasov, D. (eds) Biogenic—Abiogenic Interactions in Natural and Anthropogenic Systems. Lecture Notes in Earth System Sciences. Springer, Cham. https://doi.org/10.1007/978-3-319-24987-2_28

Download citation

Publish with us

Policies and ethics