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Plant Chromosome Preparations and Staining for Light Microscopic Studies

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Plant Microtechniques and Protocols

Abstract

Chromosome preparation is a major tool in cytogenetic analysis of an organism. Chromosome changes that occur in plant populations provide us with the evolutionary history of a species. Light microscopic observations of somatic cells provide basic information regarding the number and morphological characteristics of the chromosomes of a species. Investigations of meiotic chromosomes provide information regarding the structural changes and the way in which the chromosomes and genes segregate during sexual reproduction. Over the years several staining techniques have been developed by various researchers. In this chapter, we provide some selected methods of investigation of chromosomes for light microscopy.

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References

  1. Geitler L (1938) Chromosomenbau. Verlag Gebrüder Borntraeger, Berlin

    Google Scholar 

  2. Waldeyer W (1888) Über Karyokinese und ihre Beziehung zu den Befruchtung svorgängen. Arch Mikr Anat 32:1–222

    Article  Google Scholar 

  3. Mendel G (1886) Versuche uber Pflanzen-Hybriden. Verhandlungen des Natur-forschenden Vereines in Brunn 4:3–47 (First English translation in 1901, J Royal Horticult Soc 26:1–32)

    Google Scholar 

  4. Snustad DP, Simmons MJ (2012) Genetics, 6th edn. Wiley, New York

    Google Scholar 

  5. Sutton WS (1902) On the morphology of the chromosome group in Brachystola magna. Biol Bull 4:24–39

    Article  Google Scholar 

  6. Singh RJ (2003) Plant cytogenetics, 2nd edn. CRC Press, Boca Raton

    Google Scholar 

  7. Jackson RC (1957) New low chromosome number in plants. Science 126:1115–1116

    Article  Google Scholar 

  8. Roberto C (2005) Low chromosome number in angiosperms. Caryologia 58:403–409

    Article  Google Scholar 

  9. Khandelwal S (1990) Chromosome evolution in the genus Ophioglossum L. Bot J Linn Soc 102:205–217

    Article  Google Scholar 

  10. Hiremath SC, Chennaveeraiah MS (1982) Cytogenetical studies in wild and cultivated species of Eleusine (Gramineae). Caryologia 35:57–69

    Article  Google Scholar 

  11. Jones RN, Viegas W, Houben A (2008) A century of B-chromosomes in plants: so what? Ann Bot 101:767–775

    Article  PubMed Central  PubMed  Google Scholar 

  12. Heslop-Harrison JS, Schwarzacher T (2011) Organization of the plant genome in chromosomes. Plant J 66:18–33

    Article  CAS  PubMed  Google Scholar 

  13. Levan A, Fredga K, Sandberg AA (1964) Nomenclature for centromeric position on chromosomes. Hereditas 52:201–220

    Article  Google Scholar 

  14. Levitsky GA (1931) The morphology of chromosomes. Bull. Appl Bot Pl Breed 27:19–174

    Google Scholar 

  15. La Cour L (1941) Aceto-orcein: a new stain-fixative for chromosomes. Stain Tech 16:169–174

    Google Scholar 

  16. Fedak G, Kim NS (2008) Tools and methodologies for cytogenetic studies of plant chromosomes. Tsitol Genet 42:64–80

    PubMed  Google Scholar 

  17. Figueroa DM, Bass HW (2010) A historical and modern prospective on plant cytogenetics. Brief Funct Genomics 9:95–102

    Article  PubMed  Google Scholar 

  18. Gall JG, Pardue ML (1969) Formation and detection of RNA-DNA hybrid molecules in cytogenetical preparations. Proc Nat Acad Sci USA 63:378–383

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  19. John HA, Birnstiel ML, Jones KW (1969) RNA-DNA hybrids at cytological level. Nature 223:582–587

    Article  CAS  PubMed  Google Scholar 

  20. Lavania UC (1998) Fluorescence in situ hybridization in genome, chromosome and gene identification in plants. Curr Sci 74:126–133

    CAS  Google Scholar 

  21. Schwarzacher T (2003) DNA, chromosomes and in situ hybridization. Genome 46:953–962

    Article  CAS  PubMed  Google Scholar 

  22. Jiang J, Gill BS (2006) Current status and future of fluorescence in situ hybridization (FISH) in plant genome research. Genome 49:1057–1068

    Article  CAS  PubMed  Google Scholar 

  23. Palmer RG, Heer H (1973) A root tip squash technique for soybean chromosomes. Crop Sci 13:389–391

    Article  Google Scholar 

  24. Belling J (1921) On counting chromosomes in pollen mother cells. Amer Nat 55:573–574

    Article  Google Scholar 

  25. Lillie RD (1951) Simplification of the manufacture Schiff’s reagent for use in histochemical procedures. Stain Tech 26:163–165

    CAS  Google Scholar 

  26. De Tomasi JA (1936) Improving the technique of Feulgen stain. Stain Tech 11:137–144

    Google Scholar 

  27. Kimber G, Gill BS, Rubenstein JM, Barnhill GL (1975) The technique of Giemsa staining of cereal chromosomes. Missouri Agri Exp Stn Res Bull 1012

    Google Scholar 

  28. Sharma AK, Sharma A (1983) Chromosome techniques: theory and practice, 3rd edn. Butterworth & Co., London

    Google Scholar 

  29. Smith MU, Kindfield ACH (1999) Teaching cell division: basics and recommendations. Amer Biol Teach 61:366–371

    Article  Google Scholar 

  30. Conger AD, Fairchild M (1953) A quick freeze method for making smear slides permanent. Stain Tech 28:281–283

    CAS  Google Scholar 

  31. Celarier RP (1956) Tertiary butyl alcohol dehydration of chromosome smears. Stain Tech 31:155–157

    CAS  Google Scholar 

  32. Vosa CG, Marchi P (1972) Quinacrine fluorescence and Giemsa staining in plants. Nature New Biol 237:191–192

    Article  CAS  PubMed  Google Scholar 

  33. Marks GE (1975) The Giemsa-staining centromeres of Nigella damascena. J Cell Sci 18:19–25

    CAS  PubMed  Google Scholar 

  34. Giráldez R, Cermeno MC, Orellana J (1979) Comparison of C-banding pattern in the chromosomes of inbred lines and open pollinated varieties of rye, Z. Pflanzenzücht 83:40–48

    Google Scholar 

  35. Singh RJ, Robellen G (1975) Comparison of somatic Giemsa banding pattern in several species of rye. Z. Pflanzenzücht 75:270–285

    Google Scholar 

  36. Linde-Laursen IB (1975) Giemsa C-banding of the chromosomes of ‘Emir’ barley. Hereditas 81:285–289

    Article  Google Scholar 

  37. Stebbins GL (1971) Chromosomal evolution in higher plants. Edward Arnold, London

    Google Scholar 

  38. Darlington CD, La Cour LF (1976) Handling of chromosomes, 6th edn. George Allen & Unwin, London

    Google Scholar 

  39. White MJD (1973) Animal cytology and evolution, 3rd edn. Cambridge Univ Press, Cambridge

    Google Scholar 

  40. Darlington CD (1958) Evolution of genetic systems, 2nd edn. Oliver & Boyd, Edinburgh

    Google Scholar 

  41. Battaglia E (1955) Chromosome morphology and terminology. Caryologia 8:179–187

    Article  Google Scholar 

  42. McClintock B (1929) A method for making acetocarmin smear permanent. Stain Tech 4:53–56

    Google Scholar 

  43. Naranjo CA, Poggio L, Brandham PE (1983) A practical method of chromosome classification on the basis of centromere position. Genetica 62:51–53

    Article  Google Scholar 

  44. Matern B, Simak M (1968) Statistical problems in karyotype analysis. Hereditas 59:280–288

    Article  Google Scholar 

  45. Cai Q, Chinnappa CC (1987) Giemsa C-banded karyotypes of seven North American species of Allium. Amer J Bot 74:1087–1092

    Article  Google Scholar 

  46. Tjio JH, Levan A (1950) The use of oxyquinoline in chromosome analysis. An Estac Exp. Aula Dei 2:21–64

    Google Scholar 

  47. Meyer JR (1945) Prefixing with paradichlorobenzene to facilitate chromosome study. Stain Tech 20:121–125

    CAS  Google Scholar 

  48. Jahier J, Chevre AM, Delourme R, Eber F, Tanguy AM (1996) Technique of plant cytogenetics. Science Pub Inc., New Hampshire

    Google Scholar 

  49. Dapson RW (2007) The history, chemistry and mode of action of carmine and related dyes. Biotechnic Histochem 82:173–187

    Article  CAS  Google Scholar 

  50. Bhatia SB, Venkataraman K (1965) The position of carboxyl group in carminic acid. Indian J Chem 3:92–93

    CAS  Google Scholar 

  51. Meloan SN, Valentine LS, Puchtler H (1971) On the structure of carminic acid and carmine. Histochemie 27:87–95

    Article  CAS  PubMed  Google Scholar 

  52. Beecken H, Musso H (1961) Phenoxazines IV. The condensation of hydroquinones with O-phenylenediamine and o-aminophenols. Chem Ber 94:601–613

    Article  CAS  Google Scholar 

  53. Tonzetich J (1994) Orcein staining and the identification of polytene chromosomes. Methods Mol Biol 247:249–256

    Google Scholar 

  54. Feulgen R, Rossenbeck H (1924) Mikorskopisch-Chemischer Nachweis einer Nuclein saure vom Typus der thymonucleisaure und die darauf beruhende elektive Farbung vom Zellkernen in mikroskopischen Praparaten. Z Physiol Chem 135:203–248

    Article  CAS  Google Scholar 

  55. Schulte E, Wittekind D (1989) Standardization of the Feulgen—Schiff technique. Histochemistry 91:321–331

    Article  CAS  PubMed  Google Scholar 

  56. Greilhuber J (1977) Why plant chromosomes do not show G-bands. Theor Appl Genet 50:121–124

    CAS  PubMed  Google Scholar 

  57. Schubert I, Reiger R, Dobel P (1984) G and/or C-bands in plant chromosomes? J Cell Sci 71:111–120

    CAS  PubMed  Google Scholar 

  58. Baker JR (1966) Cytological techniques, 5th edn. Chapman & Hall, London

    Google Scholar 

  59. Johansen DA (1940) Plant microtechnique. McGraw-Hill, New York

    Google Scholar 

  60. Lillie RD, Zirkle C, Dempsey EW, Greco P (1953) Final report of the committee on histological mounting media. Stain Technol 28:57–80

    CAS  PubMed  Google Scholar 

  61. Kirkpatrick J, Lendrum AC (1939) Mounting medium for microscopical preparations giving good preservation of colour. J Path Bact 49:592–594

    Article  Google Scholar 

  62. Kirkpatrick J, Lendrum AC (1941) Further observations on the use of synthetic resin as substitute for Canada balsam, precipitation of paraffin wax in medium and on improved plasticizer. J Path Bact 53:441–443

    Article  CAS  Google Scholar 

  63. Chinnappa CC (1981) Cytological studies in the genus Krigia (Asteraceae). Can J Genet Cytol 23:671–678

    Article  Google Scholar 

  64. Chinnappa CC (1975) Structural hybridity and supernumerary chromosomes in a diploid Tradescantia hirsuticaulis. Can J Bot 53:456–465

    Article  Google Scholar 

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Correspondence to Subhash C. Hiremath .

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Hiremath, S., Chinnappa, C. (2015). Plant Chromosome Preparations and Staining for Light Microscopic Studies. In: Yeung, E., Stasolla, C., Sumner, M., Huang, B. (eds) Plant Microtechniques and Protocols. Springer, Cham. https://doi.org/10.1007/978-3-319-19944-3_16

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