Skip to main content

LabTablet: Semantic Metadata Collection on a Multi-domain Laboratory Notebook

  • Conference paper
Metadata and Semantics Research (MTSR 2014)

Part of the book series: Communications in Computer and Information Science ((CCIS,volume 478))

Included in the following conference series:

Abstract

The value of research data is recognized, and so is the importance of the associated metadata to contextualize, describe and ultimately render them understandable in the long term. Laboratory notebooks are an excellent source of domain-specific metadata, but this paper-based approach can pose risks of data loss, while limiting the possibilities of collaborative metadata production. The paper discusses the advantages of tools to complement paper-based laboratory notebooks in capturing metadata, regardless of the research domain. We propose LabTablet, an electronic laboratory book aimed at the collection of metadata from the early stages of the research workflow. To evaluate the use of LabTablet and the proposed workflow, researchers in two domains were asked to perform a set of tasks and provided insights about their experience. By rethinking the workflow and helping researchers to actively contribute to data description, the research outputs can be described with generic and domain-dependent metadata, thus improving their chances of being deposited, reused and preserved.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Talbott, T., Peterson, M., Schwidder, J., Myers, J.: Adapting the electronic laboratory notebook for the semantic era. In: Proceedings of the 2005 International Symposium on Collaborative Technologies and Systems, pp. 136–143 (2005)

    Google Scholar 

  2. Rocha da Silva, J., Ribeiro, C., Lopes, J.C.: UPData: A Data Curation Experiment at U. Porto using DSpace. In: iPres 2011 Conference Proceedings (2011)

    Google Scholar 

  3. Foundation, N.S.: Grants.gov Application Guide A Guide for Preparation and Submission of NSF Applications via Grants.gov. (2011)

    Google Scholar 

  4. Myers, J., Mendoza, E., Hoopes, B.: A Collaborative Electronic Laboratory Notebook. IMSA (2001)

    Google Scholar 

  5. Walsh, E., Cho, I.: Using Evernote as an electronic lab notebook in a translational science laboratory. Journal of Laboratory Automation 18(3), 229–234 (2013)

    Article  Google Scholar 

  6. Kumar, M.: Electronic Lab Notebooks-Collaborative Tool for Managing Knowledge in Pharmaceutical Research and Development. Journal of Engineering Computers & Applied Sciences 2(11), 14–19 (2013)

    Google Scholar 

  7. Rubacha, M., Rattan, A.K., Hosselet, S.C.: A review of electronic laboratory notebooks available in the market today. Journal of Laboratory Automation 16(1), 90–98 (2011)

    Article  Google Scholar 

  8. Hodson, S.: ADMIRAL: A Data Management Infrastructure for Research Activities in the Life sciences. Technical report, University of Oxford (2011)

    Google Scholar 

  9. Lyon, L.: Dealing with Data: Roles, Rights, Responsibilities and Relationships. Technical report, UKOLN, University of Bath (2007)

    Google Scholar 

  10. Martinez-Uribe, L., Macdonald, S.: User engagement in research data curation. In: Agosti, M., Borbinha, J., Kapidakis, S., Papatheodorou, C., Tsakonas, G. (eds.) ECDL 2009. LNCS, vol. 5714, pp. 309–314. Springer, Heidelberg (2009)

    Chapter  Google Scholar 

  11. Castro, J.A., Ribeiro, C., Rocha da Silva, J.: Designing an Application Profile Using Qualified Dublin Core: A Case Study with Fracture Mechanics Datasets. In: Dublin Core 2013 Conference Proceedings, pp. 47–52 (2013)

    Google Scholar 

  12. Shotton, D.: The JISC UMF DataFlow Project: Introduction to DataStage. Technical Report (2012)

    Google Scholar 

  13. Rocha da Silva, J., Barbosa, J.P., Gouveia, M., Lopes, J., Ribeiro, C.: UPBox and DataNotes: a collaborative data management environment for the long tail of research data. In: iPres 2013 Conference Proceedings (2013)

    Google Scholar 

  14. Geyer, F., Reiterer, H.: Experiences from Employing Evernote as a Tool for Documenting Collaborative Design Processes. In: Proceedings of the DIS12 Workshop on Supporting Reflexion in and on Design Processes (2012)

    Google Scholar 

  15. Borgman, C.L.: Advances in Information Science. Journal of the American Society for Information Science and Technology 63(6), 1059–1078 (2011)

    Article  Google Scholar 

  16. Rocha da Silva, J., Castro, J.A., Ribeiro, C., Lopes, J.C.: Dendro: collaborative research data management built on linked open data. In: Presutti, V., Blomqvist, E., Troncy, R., Sack, H., Papadakis, I., Tordai, A. (eds.) ESWC Satellite Events 2014. LNCS, vol. 8798, pp. 483–487. Springer, Heidelberg (2014)

    Google Scholar 

  17. Castro, J.A., da Silva, J.R., Ribeiro, C.: Creating lightweight ontologies for dataset description: Practical applications in a cross-domain research data management workflow. In: Proceedings of JCDL, the ACM/IEEE Joint Conference on Digital Libraries (2014)

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2014 Springer International Publishing Switzerland

About this paper

Cite this paper

Amorim, R.C., Castro, J.A., da Silva, J.R., Ribeiro, C. (2014). LabTablet: Semantic Metadata Collection on a Multi-domain Laboratory Notebook. In: Closs, S., Studer, R., Garoufallou, E., Sicilia, MA. (eds) Metadata and Semantics Research. MTSR 2014. Communications in Computer and Information Science, vol 478. Springer, Cham. https://doi.org/10.1007/978-3-319-13674-5_19

Download citation

  • DOI: https://doi.org/10.1007/978-3-319-13674-5_19

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-319-13673-8

  • Online ISBN: 978-3-319-13674-5

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics