Skip to main content

Diffusion Propagator Estimation Using Gaussians Scattered in q-Space

  • Conference paper
  • First Online:
Computational Diffusion MRI

Part of the book series: Mathematics and Visualization ((MATHVISUAL))

  • 831 Accesses

Abstract

The ensemble average diffusion propagator (EAP) obtained from diffusion MRI (dMRI) data captures important structural properties of the underlying tissue. As such, it is imperative to derive accurate estimate of the EAP from the acquired diffusion data. Taking inspiration from the theory of radial basis functions, we propose a method for estimating the EAP by representing the diffusion signal as a linear combination of 3D anisotropic Gaussian basis functions centered at the sample points in the q-space. This is in contrast to other methods, that always center the Gaussians at the origin in q-space. We also derive analytical expressions for the estimated diffusion orientation distribution function (ODF), the return-to-the-origin probability (RTOP) and the mean-squared-displacement (MSD). We validate our method on data obtained from a physical phantom with known crossing angle and on in-vivo human brain data. The performance is compared with the 3D-SHORE method of [4, 9] and radial basis function based method of [15].

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Hardcover Book
USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Assaf, Y., Freidlin, R.Z., Rohde, G.K., Basser, P.J.: New modeling and experimental framework to characterize hindered and restricted water diffusion in brain white matter. Magn. Reson. Med. 52(5), 965–978 (2004)

    Article  Google Scholar 

  2. Assemlal, H.E., Tschumperlé, D., Brun, L.: Efficient and robust computation of PDF features from diffusion MR signal. Med. Image Anal. 13(5), 715–729 (2009)

    Article  Google Scholar 

  3. Basser, P., Mattiello, J., LeBihan, D.: Estimation of the effective self-diffusion tensor from the NMR spin echo. J. Magn. Reson., Ser. B 103(3), 247–254 (1994)

    Google Scholar 

  4. Cheng, J., Ghosh, A., Jiang, T., Deriche, R.: Model-free and analytical EAP reconstruction via spherical polar Fourier diffusion MRI. In: Medical Image Computing and Computer-Assisted Intervention–MICCAI 2010, pp. 590–597. Springer (2010)

    Google Scholar 

  5. Descoteaux, M., Deriche, R., Le Bihan, D., Mangin, J.F., Poupon, C.: Multiple q-shell diffusion propagator imaging. Med. Image Anal. 15(4), 603–621 (2011)

    Article  Google Scholar 

  6. Hosseinbor, A.P., Chung, M.K., Wu, Y.C., Alexander, A.L.: Bessel fourier orientation reconstruction (bfor): an analytical diffusion propagator reconstruction for hybrid diffusion imaging and computation of q-space indices. NeuroImage 64, 650–670 (2013)

    Article  Google Scholar 

  7. Jian, B., Vemuri, B.C.: A unified computational framework for deconvolution to reconstruct multiple fibers from diffusion weighted MRI. IEEE Trans. Med. Imaging 26(11), 1464–1471 (2007)

    Article  Google Scholar 

  8. Lanczos, C.: Applied Analysis. Courier Dover Publications (1988)

    Google Scholar 

  9. Merlet, S.L., Deriche, R.: Continuous diffusion signal, EAP and ODF estimation via compressive sensing in diffusion MRI. Med. Image Anal. 17(5), 556–572 (2013)

    Google Scholar 

  10. Moussavi-Biugui, A., Stieltjes, B., Fritzsche, K., Semmler, W., Laun, F.B.: Novel spherical phantoms for Q-ball imaging under in vivo conditions. Magn. Reson. Med. 65(1), 190–194 (2011)

    Article  Google Scholar 

  11. Özarslan, E., Koay, C., Shepherd, T., Blackb, S., Basser, P.: Simple harmonic oscillator based reconstruction and estimation for three-dimensional q-space MRI. In: ISMRM 17th Annual Meeting and Exhibition, Honolulu, p. 1396 (2009)

    Google Scholar 

  12. Özarslan, E., Koay, C.G., Shepherd, T.M., Komlosh, M.E., İrfanoğlu, M.O., Pierpaoli, C., Basser, P.J.: Mean apparent propagator (MAP) MRI: A novel diffusion imaging method for mapping tissue microstructure. NeuroImage 78, 16–32 (2013)

    Article  Google Scholar 

  13. Rathi, Y., Gagoski, B., Setsompop, K., Michailovich, O., Grant, P.E., Westin, C.F.: Diffusion propagator estimation from sparse measurements in a tractography framework. In: Medical Image Computing and Computer-Assisted Intervention–MICCAI 2013, pp. 510–517. Springer (2013)

    Google Scholar 

  14. Rathi, Y., Michailovich, O., Setsompop, K., Bouix, S., Shenton, M.E., Westin, C.F.: Sparse multi-shell diffusion imaging. In: Medical Image Computing and Computer-Assisted Intervention–MICCAI 2011, pp. 58–65. Springer (2011)

    Google Scholar 

  15. Rathi, Y., Niethammer, M., Laun, F., Setsompop, K., Michailovich, O., Grant, P.E., Westin, C.F.: Diffusion propagator estimation using radial basis functions. In: Computational Diffusion MRI and Brain Connectivity, pp. 57–66. Springer (2014)

    Google Scholar 

  16. Rippa, S.: An algorithm for selecting a good value for the parameter c in radial basis function interpolation. Adv. Comput. Math. 11(2–3), 193–210 (1999)

    Article  MathSciNet  MATH  Google Scholar 

  17. Wedeen, V.J., Hagmann, P., Tseng, W.Y.I., Reese, T.G., Weisskoff, R.M.: Mapping complex tissue architecture with diffusion spectrum magnetic resonance imaging. Magn. Reson. Med. 54(6), 1377–1386 (2005)

    Article  Google Scholar 

  18. Wu, Y., Alexander, A.: Hybrid diffusion imaging. NeuroImage 36(3), 617–629 (2007)

    Article  Google Scholar 

  19. Zhang, H., Schneider, T., Wheeler-Kingshott, C.A., Alexander, D.C.: NODDI: Practical in vivo neurite orientation dispersion and density imaging of the human brain. Neuroimage 61(4), 1000–1016 (2012)

    Article  Google Scholar 

Download references

Acknowledgements

This work has been supported by NIH grants: R01MH097979 (Rathi), R01MH074794 (Westin), P41RR013218, P41EB015902 (Kikinis, Core PI: Westin), and Swedish research grant VR 2012-3682 (Westin).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Lipeng Ning .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2014 Springer International Publishing Switzerland

About this paper

Cite this paper

Ning, L., Michailovich, O., Westin, CF., Rathi, Y. (2014). Diffusion Propagator Estimation Using Gaussians Scattered in q-Space. In: O'Donnell, L., Nedjati-Gilani, G., Rathi, Y., Reisert, M., Schneider, T. (eds) Computational Diffusion MRI. Mathematics and Visualization. Springer, Cham. https://doi.org/10.1007/978-3-319-11182-7_13

Download citation

Publish with us

Policies and ethics