Abstract
In this work we propose a feature-based segmentation approach that is domain independent. While most existing approaches are based on application-specific hand-crafted features, we propose a framework for learning features from data itself at multiple scales and depth. Our features can be easily integrated into classifiers or energy-based segmentation algorithms. We test the performance of our proposed method on two MICCAI grand challenges, obtaining the top score on VESSEL12 and competitive performance on BRATS2012.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
Similar content being viewed by others
References
Paragios, N., Deriche, R.: Geodesic active regions and level set methods for supervised texture segmentation. IJCV 50(3), 223–247 (2002)
Zheng, Y., Barbu, A., Georgescu, B., Scheuering, M., Comaniciu, D.: Four-chamber heart modeling and automatic segmentation for 3D cardiac ct volumes using marginal space learning and steerable features. IEEE Trans. Medical Imaging 27(11), 1668–1681 (2008)
Criminisi, A., Robertson, D., Konukoglu, E., Shotton, J., Pathak, S., White, S., Siddiqui, K.: Regression forests for efficient anatomy detection and localization in computed tomography scans. Medical Image Analysis (2013)
Frangi, A.F., Niessen, W.J., Vincken, K.L., Viergever, M.A.: Multiscale vessel enhancement filtering. In: Wells, W.M., Colchester, A.C.F., Delp, S.L. (eds.) MICCAI 1998. LNCS, vol. 1496, pp. 130–137. Springer, Heidelberg (1998)
Raina, R., Battle, A., Lee, H., Packer, B., Ng, A.Y.: Self-taught learning: transfer learning from unlabeled data. In: ICML, pp. 759–766 (2007)
Bo, L., Ren, X., Fox, D.: Unsupervised Feature Learning for RGB-D Based Object Recognition. In: ISER (June 2012)
Krizhevsky, A., Sutskever, I., Hinton, G.: Imagenet classification with deep convolutional neural networks. In: NIPS, pp. 1106–1114 (2012)
Farabet, C., Couprie, C., Najman, L., LeCun, Y.: Scene parsing with multiscale feature learning, purity trees, and optimal covers. In: ICML (2012)
Kiros, R., Szepesvari, C.: Deep representations and codes for image auto-annotation. In: NIPS, pp. 917–925 (2012)
Srivastava, N., Salakhutdinov, R.: Multimodal learning with deep boltzmann machines. In: NIPS, pp. 2231–2239 (2012)
Dean, J., Corrado, G., Monga, R., Chen, K., Devin, M., Le, Q., Mao, M., Ranzato, M., Senior, A., Tucker, P., Yang, K., Ng, A.: Large scale distributed deep networks. In: NIPS, pp. 1232–1240 (2012)
Rigamonti, R., Lepetit, V.: Accurate and efficient linear structure segmentation by leveraging ad hoc features with learned filters. In: Ayache, N., Delingette, H., Golland, P., Mori, K. (eds.) MICCAI 2012, Part I. LNCS, vol. 7510, pp. 189–197. Springer, Heidelberg (2012)
Becker, C., Rigamonti, R., Lepetit, V., Fua, P.: Supervised feature learning for curvilinear structure segmentation. In: Mori, K., Sakuma, I., Sato, Y., Barillot, C., Navab, N. (eds.) MICCAI 2013, Part I. LNCS, vol. 8149, pp. 526–533. Springer, Heidelberg (2013)
Ciresan, D., Giusti, A., Schmidhuber, J., et al.: Deep neural networks segment neuronal membranes in electron microscopy images. In: NIPS, pp. 2852–2860 (2012)
Weiss, N., Rueckert, D., Rao, A.: Multiple sclerosis lesion segmentation using dictionary learning and sparse coding. In: Mori, K., Sakuma, I., Sato, Y., Barillot, C., Navab, N. (eds.) MICCAI 2013, Part I. LNCS, vol. 8149, pp. 735–742. Springer, Heidelberg (2013)
Rigamonti, R., Türetken, E., González, G., Fua, P., Lepetit, V.: Filter learning for linear structure segmentation. Technical report, EPFL (2011)
Coates, A., Ng, A.Y.: The importance of encoding versus training with sparse coding and vector quantization. In: ICML, vol. 8, p. 10 (2011)
Krissian, K., Malandain, G., Ayache, N., Vaillant, R., Trousset, Y.: Model-based detection of tubular structures in 3D images. Computer Vision and Image Understanding 80(2), 130–171 (2000)
Hinton, G.E., Srivastava, N., Krizhevsky, A., Sutskever, I., Salakhutdinov, R.R.: Improving neural networks by preventing co-adaptation of feature detectors. arXiv preprint arXiv:1207.0580 (2012)
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2014 Springer International Publishing Switzerland
About this paper
Cite this paper
Kiros, R., Popuri, K., Cobzas, D., Jagersand, M. (2014). Stacked Multiscale Feature Learning for Domain Independent Medical Image Segmentation. In: Wu, G., Zhang, D., Zhou, L. (eds) Machine Learning in Medical Imaging. MLMI 2014. Lecture Notes in Computer Science, vol 8679. Springer, Cham. https://doi.org/10.1007/978-3-319-10581-9_4
Download citation
DOI: https://doi.org/10.1007/978-3-319-10581-9_4
Publisher Name: Springer, Cham
Print ISBN: 978-3-319-10580-2
Online ISBN: 978-3-319-10581-9
eBook Packages: Computer ScienceComputer Science (R0)