Skip to main content

Stacked Multiscale Feature Learning for Domain Independent Medical Image Segmentation

  • Conference paper
Machine Learning in Medical Imaging (MLMI 2014)

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 8679))

Included in the following conference series:

Abstract

In this work we propose a feature-based segmentation approach that is domain independent. While most existing approaches are based on application-specific hand-crafted features, we propose a framework for learning features from data itself at multiple scales and depth. Our features can be easily integrated into classifiers or energy-based segmentation algorithms. We test the performance of our proposed method on two MICCAI grand challenges, obtaining the top score on VESSEL12 and competitive performance on BRATS2012.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

Similar content being viewed by others

References

  1. Paragios, N., Deriche, R.: Geodesic active regions and level set methods for supervised texture segmentation. IJCV 50(3), 223–247 (2002)

    Article  Google Scholar 

  2. Zheng, Y., Barbu, A., Georgescu, B., Scheuering, M., Comaniciu, D.: Four-chamber heart modeling and automatic segmentation for 3D cardiac ct volumes using marginal space learning and steerable features. IEEE Trans. Medical Imaging 27(11), 1668–1681 (2008)

    Article  Google Scholar 

  3. Criminisi, A., Robertson, D., Konukoglu, E., Shotton, J., Pathak, S., White, S., Siddiqui, K.: Regression forests for efficient anatomy detection and localization in computed tomography scans. Medical Image Analysis (2013)

    Google Scholar 

  4. Frangi, A.F., Niessen, W.J., Vincken, K.L., Viergever, M.A.: Multiscale vessel enhancement filtering. In: Wells, W.M., Colchester, A.C.F., Delp, S.L. (eds.) MICCAI 1998. LNCS, vol. 1496, pp. 130–137. Springer, Heidelberg (1998)

    Chapter  Google Scholar 

  5. Raina, R., Battle, A., Lee, H., Packer, B., Ng, A.Y.: Self-taught learning: transfer learning from unlabeled data. In: ICML, pp. 759–766 (2007)

    Google Scholar 

  6. Bo, L., Ren, X., Fox, D.: Unsupervised Feature Learning for RGB-D Based Object Recognition. In: ISER (June 2012)

    Google Scholar 

  7. Krizhevsky, A., Sutskever, I., Hinton, G.: Imagenet classification with deep convolutional neural networks. In: NIPS, pp. 1106–1114 (2012)

    Google Scholar 

  8. Farabet, C., Couprie, C., Najman, L., LeCun, Y.: Scene parsing with multiscale feature learning, purity trees, and optimal covers. In: ICML (2012)

    Google Scholar 

  9. Kiros, R., Szepesvari, C.: Deep representations and codes for image auto-annotation. In: NIPS, pp. 917–925 (2012)

    Google Scholar 

  10. Srivastava, N., Salakhutdinov, R.: Multimodal learning with deep boltzmann machines. In: NIPS, pp. 2231–2239 (2012)

    Google Scholar 

  11. Dean, J., Corrado, G., Monga, R., Chen, K., Devin, M., Le, Q., Mao, M., Ranzato, M., Senior, A., Tucker, P., Yang, K., Ng, A.: Large scale distributed deep networks. In: NIPS, pp. 1232–1240 (2012)

    Google Scholar 

  12. Rigamonti, R., Lepetit, V.: Accurate and efficient linear structure segmentation by leveraging ad hoc features with learned filters. In: Ayache, N., Delingette, H., Golland, P., Mori, K. (eds.) MICCAI 2012, Part I. LNCS, vol. 7510, pp. 189–197. Springer, Heidelberg (2012)

    Chapter  Google Scholar 

  13. Becker, C., Rigamonti, R., Lepetit, V., Fua, P.: Supervised feature learning for curvilinear structure segmentation. In: Mori, K., Sakuma, I., Sato, Y., Barillot, C., Navab, N. (eds.) MICCAI 2013, Part I. LNCS, vol. 8149, pp. 526–533. Springer, Heidelberg (2013)

    Chapter  Google Scholar 

  14. Ciresan, D., Giusti, A., Schmidhuber, J., et al.: Deep neural networks segment neuronal membranes in electron microscopy images. In: NIPS, pp. 2852–2860 (2012)

    Google Scholar 

  15. Weiss, N., Rueckert, D., Rao, A.: Multiple sclerosis lesion segmentation using dictionary learning and sparse coding. In: Mori, K., Sakuma, I., Sato, Y., Barillot, C., Navab, N. (eds.) MICCAI 2013, Part I. LNCS, vol. 8149, pp. 735–742. Springer, Heidelberg (2013)

    Chapter  Google Scholar 

  16. Rigamonti, R., Türetken, E., González, G., Fua, P., Lepetit, V.: Filter learning for linear structure segmentation. Technical report, EPFL (2011)

    Google Scholar 

  17. Coates, A., Ng, A.Y.: The importance of encoding versus training with sparse coding and vector quantization. In: ICML, vol. 8, p. 10 (2011)

    Google Scholar 

  18. Krissian, K., Malandain, G., Ayache, N., Vaillant, R., Trousset, Y.: Model-based detection of tubular structures in 3D images. Computer Vision and Image Understanding 80(2), 130–171 (2000)

    Article  MATH  Google Scholar 

  19. Hinton, G.E., Srivastava, N., Krizhevsky, A., Sutskever, I., Salakhutdinov, R.R.: Improving neural networks by preventing co-adaptation of feature detectors. arXiv preprint arXiv:1207.0580 (2012)

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2014 Springer International Publishing Switzerland

About this paper

Cite this paper

Kiros, R., Popuri, K., Cobzas, D., Jagersand, M. (2014). Stacked Multiscale Feature Learning for Domain Independent Medical Image Segmentation. In: Wu, G., Zhang, D., Zhou, L. (eds) Machine Learning in Medical Imaging. MLMI 2014. Lecture Notes in Computer Science, vol 8679. Springer, Cham. https://doi.org/10.1007/978-3-319-10581-9_4

Download citation

  • DOI: https://doi.org/10.1007/978-3-319-10581-9_4

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-319-10580-2

  • Online ISBN: 978-3-319-10581-9

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics