Abstract
Colonoscopy is the most widely used medical technique for preventing Colorectal Cancer, by detecting and removing polyps before they become malignant. Recent studies show that around 25% of the existing polyps are routinely missed. While some of these do appear in the endoscopist’s field of view, others are missed due to a partial coverage of the colon. The task of detecting and marking unseen regions of the colon has been addressed in recent work, where the common approach is based on dense 3D reconstruction, which proves to be challenging due to lack of 3D ground truth and periods with poor visual content. In this paper we propose a novel and complementary method to detect deficient local coverage in real-time for video segments where a reliable 3D reconstruction is impossible. Our method aims to identify skips along the colon caused by a drifted position of the endoscope during poor visibility time intervals. The proposed solution consists of two phases. During the first, time segments with good visibility of the colon and gaps between them are identified. During the second phase, a trained model operates on each gap, answering the question: “Do you observe the same scene before and after the gap?” If the answer is negative, the endoscopist is alerted and can be directed to the appropriate area in real-time. The second phase model is trained using a contrastive loss based on the auto-generated examples. Our method evaluation on a dataset of 250 procedures annotated by trained physicians provides sensitivity of 75% with specificity of 90%.
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References
Adjabi, I., Ouahabi, A., Benzaoui, A., Taleb-Ahmed, A.: Past, present, and future of face recognition: a review. Electronics 9(8), 1188 (2020)
Ali, S., Rittscher, J.: Efficient video indexing for monitoring disease activity and progression in the upper gastrointestinal tract. In: 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019), pp. 91–95. IEEE (2019)
Bachman, P., Hjelm, R.D., Buchwalter, W.: Learning representations by maximizing mutual information across views. Adv. Neural Inf. Process. Syst. 32, 1–11 (2019)
Bae, G., et al.: Digiface-1m: 1 million digital face images for face recognition. In: Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision, pp. 3526–3535 (2023)
Berton, G., Masone, C., Paolicelli, V., Caputo, B.: Viewpoint invariant dense matching for visual geolocalization. In: Proceedings of the IEEE/CVF International Conference on Computer Vision, pp. 12169–12178 (2021)
Brownlee, J.: XGBoost With python: gradient boosted trees with XGBoost and scikit-learn. In: Machine Learning Mastery (2016)
Chen, H., Wang, Y., Lagadec, B., Dantcheva, A., Bremond, F.: Joint generative and contrastive learning for unsupervised person re-identification. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, pp. 2004–2013 (2021)
Chen, R.J., Bobrow, T.L., Athey, T., Mahmood, F., Durr, N.J.: Slam endoscopy enhanced by adversarial depth prediction. arXiv preprint arXiv:1907.00283 (2019)
Chen, T., Kornblith, S., Norouzi, M., Hinton, G.: A simple framework for contrastive learning of visual representations. In: International Conference on Machine Learning, pp. 1597–1607. PMLR (2020)
Deng, J., Guo, J., Xue, N., Zafeiriou, S.: Arcface: additive angular margin loss for deep face recognition. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition. pp. 4690–4699 (2019)
Freedman, D., et al.: Detecting deficient coverage in colonoscopies. IEEE Trans. Med. Imaging 39(11), 3451–3462 (2020)
Hadsell, R., Chopra, S., LeCun, Y.: Dimensionality reduction by learning an invariant mapping. In: 2006 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2006), vol. 2, pp. 1735–1742. IEEE (2006)
He, K., Fan, H., Wu, Y., Xie, S., Girshick, R.: Momentum contrast for unsupervised visual representation learning. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, pp. 9729–9738 (2020)
Howard, A., et al.: Searching for mobilenetv3. In: Proceedings of the IEEE/CVF International Conference on Computer Vision, pp. 1314–1324 (2019)
Kelner, O., Weinstein, O., Rivlin, E., Goldenberg, R.: Motion-based weak supervision for video parsing with application to colonoscopy. In: Proceedings of the “What is Motion for?” Workshop, ECCV (2022)
Kim, N.H., et al.: Miss rate of colorectal neoplastic polyps and risk factors for missed polyps in consecutive colonoscopies. Intest. Res. 15(3), 411 (2017)
Kingma, D.P., Ba, J.: Adam: a method for stochastic optimization. arXiv preprint arXiv:1412.6980 (2014)
Kortli, Y., Jridi, M., Al Falou, A., Atri, M.: Face recognition systems: a survey. Sensors 20(2), 342 (2020)
Lin, T.Y., Belongie, S., Hays, J.: Cross-view image geolocalization. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 891–898 (2013)
Lin, T.Y., Cui, Y., Belongie, S., Hays, J.: Learning deep representations for ground-to-aerial geolocalization. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 5007–5015 (2015)
Lin, Y., Xie, L., Wu, Y., Yan, C., Tian, Q.: Unsupervised person re-identification via softened similarity learning. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, pp. 3390–3399 (2020)
Ma, R., et al.: Colon10k: a benchmark for place recognition in colonoscopy. In: 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), pp. 1279–1283. IEEE (2021)
Oliveira, M., Araujo, H., Figueiredo, I.N., Pinto, L., Curto, E., Perdigoto, L.: Registration of consecutive frames from wireless capsule endoscopy for 3d motion estimation. IEEE Access 9, 119533–119545 (2021)
Posner, E., Zholkover, A., Frank, N., Bouhnik, M.: C3 fusion: consistent contrastive colon fusion, towards deep slam in colonoscopy. arXiv preprint arXiv:2206.01961 (2022)
Radenović, F., Tolias, G., Chum, O.: Fine-tuning CNN image retrieval with no human annotation. IEEE Trans. Pattern Anal. Mach. Intell. 41(7), 1655–1668 (2018)
Rau, A., et al.: Implicit domain adaptation with conditional generative adversarial networks for depth prediction in endoscopy. Int. J. Comput. Assist. Radiol. Surg. 14(7), 1167–1176 (2019)
Shao, S., et al.: Self-supervised monocular depth and ego-motion estimation in endoscopy: appearance flow to the rescue. Med. Image Anal. 77, 102338 (2022)
Sun, D., Yang, X., Liu, M.Y., Kautz, J.: Pwc-net: cnns for optical flow using pyramid, warping, and cost volume. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 8934–8943 (2018)
Wang, D., Zhang, S.: Unsupervised person re-identification via multi-label classification. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, pp. 10981–10990 (2020)
Wang, F., Liu, H.: Understanding the behaviour of contrastive loss. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, pp. 2495–2504 (2021)
Wolf, L., Hassner, T., Taigman, Y.: Descriptor based methods in the wild. In: Workshop on Faces in ‘Real-Life’ Images: Detection, Alignment, and Recognition (2008)
Yan, C., Gong, B., Wei, Y., Gao, Y.: Deep multi-view enhancement hashing for image retrieval. IEEE Trans. Pattern Anal. Mach. Intell. 43(4), 1445–1451 (2020)
Zhang, S., Zhao, L., Huang, S., Ye, M., Hao, Q.: A template-based 3d reconstruction of colon structures and textures from stereo colonoscopic images. IEEE Trans. Med. Rob. Bionics 3(1), 85–95 (2020)
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Leifman, G., Kligvasser, I., Goldenberg, R., Rivlin, E., Elad, M. (2023). Colonoscopy Coverage Revisited: Identifying Scanning Gaps in Real-Time. In: Ali, S., van der Sommen, F., van Eijnatten, M., Papież, B.W., Jin, Y., Kolenbrander, I. (eds) Cancer Prevention Through Early Detection. CaPTion 2023. Lecture Notes in Computer Science, vol 14295. Springer, Cham. https://doi.org/10.1007/978-3-031-45350-2_9
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