Abstract
After 3+ years of investigation, the origin of SARS-CoV-2 remains unclear, and both a spillover event from nature and a lab accident are heavily debated. As the Covid pandemic has caused unprecedented loss and damage affecting everyone worldwide, there is no sound rationale that the virus had been deliberately released. While the catastrophic effects of the pandemic remain to be resolved, it is of paramount importance to safeguard the future so that similarly tragic events could be prevented. Many of the discussions surrounding the origin of the virus have centered on dangerous (“gain-of-function”) research, noting that the technology to generate pathogens with pandemic potentials is readily in place. Yet, an additional factor that causes concern has not received much attention—the intended weaponization of pathogens via a computer interface.
This work analyzes possible gaps fostered by the computerization and automation of related biotechnologies, taking the pandemic as an example to scrutinize any possible vulnerabilities that could be exploited by malicious actors. In addition to questions about the origin of SARS-CoV-2, actual challenges during the pandemic will be discussed from an adversarial perspective, revealing a disturbing gap between an actual biological/clinical entity in question and their digital information, which is difficult to close even in a well-intended context.
The cyberbiosecurity gaps identified both during the emergence of the pandemic as well as during its unfolding are not meant as judgments of past events, but to demonstrate the reality of these dangers. The potential for intended exploitation in a related situation can be enormous, leading to vulnerabilities related to attribution as well as the integrity, confidentiality, and availability of genetic information, molecular assays, devices, and the interpretation of computerized processes and tools used throughout the public health sector. It is argued here that the inherent dangers stemming from (“dual-use research”) get highly exacerbated by cyber interfaces, allowing bad actors to exploit “dual-appearance” gaps that effectively can camouflage the most dangerous research projects and enable the generation and release of more dangerous bioweapons than ever seen before.
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Notes
- 1.
What exactly constitutes gain-of-function has been heavily debated. This chapter applies the definition of the U.S. government which understands gain-of-function as studies or research that ‘improves the ability of a pathogen to cause disease.’ Such work inherently entails biosafety and biosecurity risks, as e.g. related to the ‘enhancement of a pathogen’s transmissibility or virulence in humans’ - see https://www.phe.gov/s3/dualuse/Pages/GainOfFunction.aspx
- 2.
Dual-use here is understood as research or policy that could be used for good or bad purposes.
- 3.
Highly cited genetics studies found to contain sequence errors. Kwon Diana Nature, 10 Feb 2023, DOI: https://doi.org/10.1038/d41586-023-00385-7
References
D.A. Álvarez-Díaz, C. Franco-Muñoz, K. Laiton-Donato, J.A. Usme-Ciro, n.d. Franco-Sierra, A.C. Flórez-Sánchez, S. Gómez-Rangel, L.D. Rodríguez-Calderon, J. Barbosa-Ramirez, E. Ospitia-Baez, et al., Molecular analysis of several in-house rRT-PCR protocols for SARS-CoV-2 detection in the context of genetic variability of the virus in colombia. Infect. Genet. Evol. 84, 104390 (2020)
B.K. Ambati, A. Varshney, K. Lundstrom, G. Palú, B.D. Uhal, V.N. Uversky, A.M. Brufsky, MSH3 homology and potential recombination link to SARS-CoV-2 furin cleavage site. Front. Virol., 10 (2022)
American Heart Association, Coronavirus spike protein activated natural immune response, damaged heart muscle cells. https://newsroom.heart.org/news/coronavirus-spike-protein-activated-natural-immune-response-damaged-heart-muscle-cells (2022)
A. Anubhav, Dnashell : Iran based attackers utilize a DNA sequencer exploit for genetic information theft. https://www.ankitanubhav.info/post/dnashell (2019)
N. Arnheim, G.T. Horn, R.K. Saiki, S.J. Scharf, K.B. Mullis, H.A. Erlich, Process for amplifying, detecting, and/or-cloning nucleic acid sequences. https://patents.justia.com/patent/4683195 (1986)
B. Biggio, F. Roli, Wild patterns: Ten years after the rise of adversarial machine learning. Pattern Recognition 84, 317–331 (2018)
J.D. Bloom, Recovery of deleted deep sequencing data sheds more light on the early Wuhan SARS-CoV-2 epidemic. Mol. Biol. Evol. 38(12), 5211–5224 (2021)
T. Buschmann, L.V. Bystrykh, Levenshtein error-correcting barcodes for multiplexed DNA sequencing. BMC Bioinformatics 14(1), 1–10 (2013)
E. Callaway, Deleted coronavirus genome sequences trigger scientific intrigue (2021)
J. Caswell, J.D. Gans, N. Generous, C.M. Hudson, E. Merkley, C. Johnson, C. Oehmen, K. Omberg, E. Purvine, K. Taylor, C.L. Ting, M. Wolinsky, G. Xie, Defending our public biological databases as a global critical infrastructure. Front. Bioeng. Biotechnol. 7, 58 (2019)
Centers for Disease Control and Prevention, 07/21/2021: Lab alert: Changes to CDC RT-PCR for SARS-CoV-2 testing. https://web.archive.org/web/20220822080253/https://www.cdc.gov/csels/dls/locs/2021/07-21-2021-lab-alert-Changes_CDC_RT-PCR_SARS-CoV-2_Testing_1.html (2021)
C. Cimpanu, Mysterious iranian group is hacking into DNA sequencers hackers are scanning the internet and planting shells on web-based dna sequencing apps. https://www.zdnet.com/article/mysterious-iranian-group-is-hacking-into-dna-sequencers/ (2019)
E. Clough, J. Inigo, D. Chandra, L. Chaves, J.L. Reynolds, R. Aalinkeel, S.A. Schwartz, A. Khmaladze, S.D. Mahajan, Mitochondrial dynamics in SARS-COV2 spike protein treated human microglia: Implications for neuro-covid. J. Neuroimmune Pharmacol. 16(4), 770–784 (2021)
J. Cohen, Anywhere but here. Science (New York, NY) 377(6608), 805–809 (2022)
V.M. Corman, O. Landt, M. Kaiser, R. Molenkamp, A. Meijer, D.K. Chu, T. Bleicker, S. Brünink, J. Schneider, M.L. Schmidt, et al., Detection of 2019 novel coronavirus (2019-ncov) by real-time RT-PCR. Eurosurveillance 25(3), 2000045 (2020)
Y. Deigin, R. Segreto, SARS-CoV-2’s claimed natural origin is undermined by issues with genome sequences of its relative strains: Coronavirus sequences RaTG13, MP789 and RmYN02 raise multiple questions to be critically addressed by the scientific community. Bioessays 43(7), 2100015 (2021)
B. Diao, C. Wang, Y. Tan, X. Chen, Y. Liu, L. Ning, L. Chen, M. Li, Y. Liu, G. Wang, et al., Reduction and functional exhaustion of t cells in patients with coronavirus disease 2019 (Covid-19). Front. Immunol., 827 (2020)
C. Drosten, S. Günther, W. Preiser, S. van der Werf, H.-R. Brodt, S. Becker, H. Rabenau, M. Panning, L. Kolesnikova, R.A. Fouchier, A. Berger, A.-M. Burguière, J. Cinatl, M. Eickmann, N. Escriou, K. Grywna, S. Kramme, J.-C. Manuguerra, S. Müller, V. Rickerts, M. Stürmer, S. Vieth, H.-D. Klenk, A.D. Osterhaus, H. Schmitz, H.W. Doerr, Identification of a novel coronavirus in patients with severe acute respiratory syndrome. New Engl. J. Med. 348(20), 1967–1976 (2003). PMID: 12690091
European Centre for Disease Prevention and Control, Methods for the detection and characterisation of SARS-CoV-2 variants – first update. 20 December 2021. https://www.ecdc.europa.eu/en/publications-data/methods-detection-and-characterisation-sars-cov-2-variants-first-update (2021)
S.G. Finlayson, J.D. Bowers, J. Ito, J.L. Zittrain, A.L. Beam, I.S. Kohane, Adversarial attacks on medical machine learning. Science 363(6433), 1287–1289 (2019)
G. Fongaro, P.H. Stoco, D.S.M. Souza, E.C. Grisard, M.E. Magri, P. Rogovski, M.A. Schörner, F.H. Barazzetti, A.P. Christoff, L.F.V. de Oliveira, M.L. Bazzo, G. Wagner, M. Hernández, D. Rodríguez-Lázaro, The presence of SARS-CoV-2 RNA in human sewage in Santa Catarina, Brazil, November 2019. Sci. Total Environ. 778, 146198 (2021)
U. Food, D. Administration, FDA facts: Biomarkers and surrogate endpoints. https://www.fda.gov/about-fda/innovation-fda/fda-facts-biomarkers-and-surrogate-endpoints (2017)
J.E. Gallegos, S. Hayrynen, N.R. Adames, J. Peccoud, Challenges and opportunities for strain verification by whole-genome sequencing. Scientific Reports 10(1), 1–9 (2020)
L.M. Grobbelaar, C. Venter, M. Vlok, M. Ngoepe, G.J. Laubscher, P.J. Lourens, J. Steenkamp, D.B. Kell, E. Pretorius, SARS-CoV-2 spike protein S1 induces fibrin (ogen) resistant to fibrinolysis: implications for microclot formation in Covid-19. Bioscience Reports 41(8), BSR20210611 (2021)
K. Hagemann, K. Riecken, J.M. Jung, H. Hildebrandt, S. Menzel, M.J. Bunders, B. Fehse, F. Koch-Nolte, F. Heinrich, S. Peine, et al., Natural killer cell-mediated adcc in SARS-CoV-2-infected individuals and vaccine recipients. Eur. J. Immunol. 52(8), 1297–1307 (2022)
H. Hirano, A. Minagi, K. Takemoto, Universal adversarial attacks on deep neural networks for medical image classification. BMC Med. Imag. 21(1), 1–13 (2021)
International Consortium of Scientists in Life Sciences (ICSLS), Review report corman-drosten et al. eurosurveillance 2020. https://cormandrostenreview.com/ (2020)
M. Kircher, S. Sawyer, M. Meyer, Double indexing overcomes inaccuracies in multiplex sequencing on the illumina platform. Nucleic Acids Res. 40(1), e3–e3 (2012)
E. Kopp, Another missing database? Ecohealth project in southeast Asia is under construction. https://usrtk.org/biohazards-blog/another-missing-database-ecohealth-project-in-southeast-asia-is-under-construction/?mc_cid=ce6fb1f44f&mc_eid=6cb23747ff (2022)
S.H. Lee, Implementation of the ECDC/WHO recommendation for molecular diagnosis of SARS-CoV-2 Omicron subvariants and its challenges (2022)
A. Mandavilli, Your coronavirus test is positive. Maybe it shouldn’t be. https://www.nytimes.com/2020/08/29/health/coronavirus-testing.html (2020)
A. Maxmen, Wuhan market was epicentre of pandemic’s start, studies suggest (2022)
MSNBC, Covid tests don’t do what you think they do, dr. fauci explains. https://www.youtube.com/watch?v=bAICMQ1D5F8&t=5s (2021)
R.S. Murch, W.K. So, W.G. Buchholz, S. Raman, J. Peccoud, Cyberbiosecurity: An emerging new discipline to help safeguard the bioeconomy. Front. Bioeng. Biotechnol. 6, 39 (2018)
National Academies of Sciences, Engineering, and Medicine, Safeguarding the Bioeconomy (The National Academies Press, Washington, DC, 2020)
P.M. Ney, Securing the future of biotechnology: A study of emerging bio-cyber security threats to DNA-information systems (Doctoral dissertation). PhD thesis, 2019
A. Noymer, Four things i want to know about the origin of Covid. https://www.washingtonexaminer.com/opinion/op-eds/four-things-i-want-to-know-about-the-origin-of-covid?utm_source=substack&utm_medium=email (2022)
J. Peccoud, J.E. Gallegos, R. Murch, W.G. Buchholz, S. Raman, Cyberbiosecurity: from naive trust to risk awareness. Trends Biotechnol. 36(1), 4–7 (2018)
S. Piplani, P.K. Singh, D.A. Winkler, N. Petrovsky, In silico comparison of SARS-CoV-2 spike protein-ace2 binding affinities across species and implications for virus origin. Scientific Reports 11(1), 1–13 (2021)
E. Pretorius, M. Vlok, C. Venter, J.A. Bezuidenhout, G.J. Laubscher, J. Steenkamp, D.B. Kell, Persistent clotting protein pathology in long covid/post-acute sequelae of Covid-19 (PASC) is accompanied by increased levels of antiplasmin. Cardiovascular Diabetology 20(1), 1–18 (2021)
S.C. Quay, A Bayesian analysis concludes beyond a reasonable doubt that SARS-CoV-2 is not a natural zoonosis but instead is laboratory derived (2021)
W. Randazzo, P. Truchado, E. Cuevas-Ferrando, P. Simón, A. Allende, G. Sánchez, SARS-CoV-2 RNA in wastewater anticipated Covid-19 occurrence in a low prevalence area. Water Research 181, 115942 (2020)
W. Ren, X. Qu, W. Li, Z. Han, M. Yu, P. Zhou, S.-Y. Zhang, L.-F. Wang, H. Deng, Z. Shi, Difference in receptor usage between severe acute respiratory syndrome (SARS) coronavirus and SARS-like coronavirus of bat origin. J. Virol. 82(4), 1899–1907 (2008)
G.J. Schumacher, S. Sawaya, D. Nelson, A.J. Hansen, Genetic information insecurity as state of the art. Front. Bioeng. Biotechnol. 8, 591980 (2020)
K. Sirotkinm, D. Sirotkin, Might SARS-CoV-2 have arisen via serial passage through an animal host or cell culture? A potential explanation for much of the novel coronavirus’ distinctive genome. BioEssays 42(10), 2000091 (2020)
The Cambridge Working Group, Cambridge working group consensus statement on the creation of potential pandemic pathogens (PPPS). http://www.cambridgeworkinggroup.org/ (2014)
The Centers for Disease Control and Prevention (CDC), Cdc 2019-novel coronavirus (2019-NCoV) real-time RT-PCR diagnostic panel. https://www.fda.gov/media/134922/download
The Epoch Times, U.S. university concedes it may have broken law in contract with Wuhan lab. https://www.theepochtimes.com/us-university-says-its-poorly-drafted-contract-with-wuhan-lab-may-have-broken-law_4644724.html (2022)
The Federal Bureau of Investigation (FBI), FBI and CISA warn against chinese targeting of Covid-19 research organizations. https://www.fbi.gov/news/press-releases/press-releases/fbi-and-cisa-warn-against-chinese-targeting-of-covid-19-research-organizations (2020)
T. Thi Nhu Thao, F. Labroussaa, N. Ebert, P. V’kovski, H. Stalder, J. Portmann, J. Kelly, S. Steiner, M. Holwerda, A. Kratzel, et al., Rapid reconstruction of SARS-CoV-2 using a synthetic genomics platform. Nature 582(7813), 561–565 (2020)
Tim Spector and Collaborators, The Zoe health study. https://health-study.joinzoe.com/, n.d.
U.B.C. on Biodefense, Biologia et machina: Cyberbiosecurity for today’s hybrid evolution - virtual meeting. https://biodefensecommission.org/events/biologia-et-machina-cyberbiosecurity-for-todays-hybrid-evolution/ (2021)
U.B.C. on Biodefense, Revisiting gain of function research: What the pandemic taught us and where do we go from here - senate hearing. https://www.hsgac.senate.gov/subcommittees/etso/hearings/revisiting-gain-of-function-research-what-the-pandemic-taught-us-and-where-do-we-go-from-here (2022)
U.S. Senate Committee on Homeland Security & Governmental Affairs Hearings, Revisiting gain of function research: What the pandemic taught us and where do we go from here subcommittee on emerging threats and spending oversight. https://www.hsgac.senate.gov/subcommittees/etso/hearings/revisiting-gain-of-function-research-what-the-pandemic-taught-us-and-where-do-we-go-from-here (2022)
B.A. Vinatzer, L.S. Heath, H.M.J. Almohri, M.J. Stulberg, C. Lowe, S. Li, Cyberbiosecurity challenges of pathogen genome databases. Front. Bioeng. Biotechnol. 7, 106 (2019)
C. Wang, Z. Liu, Z. Chen, X. Huang, M. Xu, T. He, Z. Zhang, The establishment of reference sequence for SARS-CoV-2 and variation analysis. J. Med. Virol. 92(6), 667–674 (2020)
World Health Organization, Who information notice for IVD users 2020/05. https://www.who.int/news/item/20-01-2021-who-information-notice-for-ivd-users-2020-05 (2021)
M. Worobey, J.I. Levy, L.M. Serrano, A. Crits-Christoph, J.E. Pekar, S.A. Goldstein, A.L. Rasmussen, M.U.G. Kraemer, C. Newman, M.P.G. Koopmans, M.A. Suchard, J.O. Wertheim, P. Lemey, D.L. Robertson, R.F. Garry, E.C. Holmes, A. Rambaut, K.G. Andersen, The Huanan seafood wholesale market in Wuhan was the early epicenter of the Covid-19 pandemic. Science 377(6609), 951–959 (2022)
D. Zhang, The Pan-SL-CoV/GD sequences may be from contamination (2020)
Y. Zheng, J. Zhao, J. Li, Z. Guo, J. Sheng, X. Ye, G. Jin, C. Wang, W. Chai, J. Yan, et al., SARS-CoV-2 spike protein causes blood coagulation and thrombosis by competitive binding to heparan sulfate. Int. J. Biol. Macromol. 193, 1124–1129 (2021)
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I would like to thank Guy Halevi for his careful reading of an earlier version of this work and his helpful comments.
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Mueller, S. (2023). Potentials of Pathogen Research Through the Lens of Cyberbiosecurity, or What Threat Actors Can Learn from the Covid-19 Pandemic. In: Greenbaum, D. (eds) Cyberbiosecurity. Springer, Cham. https://doi.org/10.1007/978-3-031-26034-6_10
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