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A Novel Approach to Enhance Effectiveness of Image Segmentation Techniques on Extremely Noisy Medical Images

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Recent Trends in Image Processing and Pattern Recognition (RTIP2R 2022)

Abstract

Through this study, I contribute towards segmentation of liver areas and have proposed additional improvements, which positively influence image segmentation. In this study, I have subjected medical images from LiTS - Liver Tumour Segmentation Challenge, which are extremely noisy, to various image segmentation techniques belonging to fully automatic and semi-automatic categories. These varied techniques implement different approaches towards image segmentation problem. All the techniques had initially failed to segment the images with very poor results. Commonly used filters for pre-processing, such as median filter, top hat filter, wiener filter, etc., were ineffective in reducing the noise effectively. Through this study, I have introduced a new combinatorial approach which not only is easier to implement but also much faster as well and resulted in much more enhanced input image quality that significantly improved the segmentation outcomes. Our approach has reduced noise, sharpened the edges, “localized” the segmentation problem before subjecting to various segmentation techniques. The techniques which had failed previously now could segment the images with improved speed of execution, efficiency and accuracy. I have studied our approach on 10 well known image segmentation techniques. Accuracy of these segmentation techniques was determined by computing Jaccard Index, Dice Coefficient and Hausdorff Distance.

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References

  1. Kaur, D., Kaur, Y.: Various image segmentation techniques: a review. Int. J. Comput. Sci. Mob. Comput. 3, 809–814 (2014)

    Google Scholar 

  2. Adams, R., Bischof, L.: Seeded region growing. IEEE Trans. Pattern Anal. Mach. Intell. 16(6), 641–647 (1994). https://doi.org/10.1109/34.295913

    Article  Google Scholar 

  3. Besl, P.J., Jain, R.C.: Segmentation through variable-order surface fitting. IEEE Trans. Pattern Anal. Mach. Intell. 10(2), 167–192 (1988)

    Article  Google Scholar 

  4. Haralick, R.M., Shapiro, L.G.: Image segmentation techniques. Comput. Vis. Graph. Image Process. 29(1), 100–132 (1985). https://doi.org/10.1016/S0734-189X(85)90153-7

    Article  Google Scholar 

  5. Sahoo, P., Soltani, S., Wong, A.: A survey of thresholding techniques. Comput. Vis. Graph. Image Process. 41(2), 233–260 (1988). https://doi.org/10.1016/0734-189X(88)90022-9

    Article  Google Scholar 

  6. CodaLab Competition. https://competitions.codalab.org/competitions/17094

  7. Boykov, Y., Jolly, M.P.: Interactive graph cuts for optimal boundary & region segmentation of objects in N-D images. In: Proceedings of the Eighth IEEE International Conference on Computer Vision, vol. 1, pp. 105–112 (2001). https://doi.org/10.1109/ICCV.2001.937505

  8. Ben Salah, M., Mitiche, A., Ben Ayed, I.: Multiregion image segmentation by parametric kernel graph cuts. IEEE Trans. Image Process. 20, 545–w557 (2011). https://doi.org/10.1109/TIP.2010.2066982

  9. Blake, A., Rother, C., Brown, M., Perez, P., Torr, P.: Interactive image segmentation using an adaptive GMMRF model. In: Pajdla, T., Matas, J. (eds.) ECCV 2004. LNCS, vol. 3021, pp. 428–441. Springer, Heidelberg (2004). https://doi.org/10.1007/978-3-540-24670-1_33

    Chapter  Google Scholar 

  10. Kass, M., Witkin, A., Terzopoulos, D.: Snakes: active contour models. Int. J. Comput. Vis. 1(4), 321–331 (1988). https://doi.org/10.1007/BF00133570

    Article  MATH  Google Scholar 

  11. Aganj, I.: Image Segmentation Based on the Local Center of Mass, January 2019. https://in.mathworks.com/matlabcentral/fileexchange/68561-imagesegmentation-based-on-the-local-center-of-mass

  12. Aganj, I., Harisinghani, M.G., Weissleder, R., Fischl, B.: Unsupervised medical image segmentation based on the local center of mass. Sci. Rep. 8(1), 13012 (2018). https://doi.org/10.1038/s41598-018-31333-5

    Article  Google Scholar 

  13. Nock, R., Nielsen, F.: Statistical region merging. IEEE Trans. Pattern Anal. Mach. Intell. 26(11), 1452–1458 (2004). https://doi.org/10.1109/TPAMI.2004.110

    Article  Google Scholar 

  14. Rother, C., Kolmogorov, V., Blake, A.: GrabCut - interactive foreground extraction using iterated graph cuts. In: ACM Transactions on Graphics (SIGGRAPH), August 2004

    Google Scholar 

  15. Grady, L.: Random walks for image segmentation. IEEE Trans. Pattern Anal. Mach. IntelL. 28(11), 1768–1783 (2006). https://doi.org/10.1109/TPAMI.2006.233

    Article  Google Scholar 

  16. Li, Y., Sun, J., Tang, C.K., Shum, H.Y.: Lazy snapping. In: ACM SIGGRAPH 2004 Papers on - SIGGRAPH 2004, Los Angeles, California, p. 303. ACM Press (2004). https://doi.org/10.1145/1186562.1015719

  17. Powers, D.M.W.: Evaluation: from precision, recall and f-measure to ROC, informedness, markedness & correlation. J. Mach. Learn. Technol. 2(1), 37–63 (2011)

    MathSciNet  Google Scholar 

  18. Fawcett, T.: An introduction to ROC analysis. Pattern Recogn. Lett. 27(8), 861–874 (2006). https://doi.org/10.1016/j.patrec.2005.10.010

    Article  MathSciNet  Google Scholar 

  19. Davis, L.S.: A survey of edge detection techniques. Comput. Graph. Image Process. 4(3), 248–270 (1975). https://doi.org/10.1016/0146-664X(75)90012-X

    Article  Google Scholar 

  20. Oulhaj, H., Amine, A., Rziza, M., Aboutajdine, D.: Noise reduction in medical images - comparison of noise removal algorithms -. In: 2012 International Conference on Multimedia Computing and Systems, pp. 344–349 (2012)

    Google Scholar 

  21. Chen, L., Song, H., Wang, C., et al.: Liver tumor segmentation in CT volumes using an adversarial densely connected network. BMC Bioinform. 20(Suppl. 16), 587 (2019). https://doi.org/10.1186/s12859-019-3069-x

    Article  Google Scholar 

  22. Ayalew, Y.A., Fante, K.A., Mohammed, M.: Modified U-Net for liver cancer segmentation from computed tomography images with a new class balancing method. BMC Biomed. Eng. 3, 4 (2021). https://doi.org/10.1186/s42490-021-00050-y

    Article  Google Scholar 

  23. Dong, C., et al.: An improved random walker with Bayes model for volumetric medical image segmentation. J. Healthc. Eng. 2017, 1–11 (2017). https://doi.org/10.1155/2017/6506049

    Article  Google Scholar 

  24. Bailey, D.L. (ed.): Positron Emission Tomography: Basic Sciences. Springer, New York (2005). https://doi.org/10.1007/b136169

    Book  Google Scholar 

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Acknowledgements

The author would like to acknowledge the organizing committee of LiTS - Liver Tumor Segmentation Challenge (https://competitions.codalab.org/competitions/17094) for making dataset along with ground truth publicly available for research purposes.

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This research did not receive any specific grant from funding agencies in the public, commercial, or not-for-profit sectors.

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Correspondence to Anuja Deshpande .

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Deshpande, A. (2023). A Novel Approach to Enhance Effectiveness of Image Segmentation Techniques on Extremely Noisy Medical Images. In: Santosh, K., Goyal, A., Aouada, D., Makkar, A., Chiang, YY., Singh, S.K. (eds) Recent Trends in Image Processing and Pattern Recognition. RTIP2R 2022. Communications in Computer and Information Science, vol 1704. Springer, Cham. https://doi.org/10.1007/978-3-031-23599-3_8

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  • DOI: https://doi.org/10.1007/978-3-031-23599-3_8

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