Abstract
We consider the problem of automatically detecting drug-drug interactions, i.e., the occurrence of an adverse reaction caused by the co-administration of two or more drugs, from reports of suspected cases. This is an important problem because of the health implications that correctly identifying drug-drug interactions has, and because the automatic detection of such cases would enable analysis and monitoring at scale. Current automated methods are based on associations and correlation relationships between datapoints, and thus fail to identify casual relationships. In this context, we propose a novel approach that specifically identifies the combined causes and multiple causes of drug-drug interactions, along with the actual direction of the casual relation. The method is empirically validated on a real-world adverse effect dataset and contrasted against current methods for automatic drug-drug interaction.
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Notes
- 1.
MedicinesComplete published in Pharmaceutical Press and the Royal Pharmaceutical Society:https://www.medicinescomplete.com/mc/alerts/current/drug-interactions.htm.
- 2.
Data sources from Micromedex, Multum and Wolters Kluwer database:https://www.drugs.com/drug_interactions.php.
References
Aliferis, C.F., Statnikov, A., Tsamardinos, I., Mani, S., Koutsoukos, X.D.: Local causal and Markov blanket induction for causal discovery and feature selection for classification part i: algorithms and empirical evaluation. J. Mach. Learn. Res. 11(Jan), 171–234 (2010)
Aliferis, C.F., Statnikov, A., Tsamardinos, I., Mani, S., Koutsoukos, X.D.: Local causal and Markov blanket induction for causal discovery and feature selection for classification part ii: analysis and extensions. J. Mach. Learn. Res. 11(Jan), 235–284 (2010)
Bate, A., Evans, S.: Quantitative signal detection using spontaneous ADR reporting. Pharmacoepidemiol. Drug Saf. 18(6), 427–436 (2009)
Bühlmann, P., Kalisch, M., Maathuis, M.H.: Variable selection in high-dimensional linear models: partially faithful distributions and the pc-simple algorithm. Biometrika 97(2), 261–278 (2010)
Cai, R.: Identification of adverse drug-drug interactions through causal association rule discovery from spontaneous adverse event reports. Artif. Intell. Med. 76, 7–15 (2017)
Chickering, D.M., Heckerman, D., Meek, C.: Large-sample learning of Bayesian networks is NP-hard. J. Mach. Learn. Res. 5, 1287–1330 (2004)
Cooper, G.F.: A simple constraint-based algorithm for efficiently mining observational databases for causal relationships. Data Min. Knowl. Disc. 1(2), 203–224 (1997). https://doi.org/10.1023/A:1009787925236
Elath, H., Dixit, R.R., Schumaker, R.P., Veronin, M.A.: Predicting deadly drug combinations through a machine learning approach (2018)
Freedman, D.: From association to causation: some remarks on the history of statistics. J. Soc. Fr. Stat. 140(5), 5–32 (1999)
Hansen, M.L., et al.: Risk of bleeding with single, dual, or triple therapy with warfarin, aspirin, and clopidogrel in patients with atrial fibrillation. Arch. Intern. Med. 170(16), 1433–1441 (2010)
Harpaz, R., Chase, H.S., Friedman, C.: Mining multi-item drug adverse effect associations in spontaneous reporting systems. In: BMC Bioinformatics, vol. 11, pp. 1–8. BioMed Central (2010)
Harpaz, R., Perez, H., Chase, H.S., Rabadan, R., Hripcsak, G., Friedman, C.: Biclustering of adverse drug events in the FDA’s spontaneous reporting system. Clin. Pharmacol. Ther. 89(2), 243–250 (2011)
Ibrahim, H., Saad, A., Abdo, A., Eldin, A.S.: Mining association patterns of drug-interactions using post marketing FDA’s spontaneous reporting data. J. Biomed. Inform. 60, 294–308 (2016)
Jin, Z., Li, J., Liu, L., Le, T.D., Sun, B., Wang, R.: Discovery of causal rules using partial association. In: Data Mining (ICDM), 2012 IEEE 12th International Conference on, pp. 309–318. IEEE (2012)
Kovesdy, C.P., Kalantar-Zadeh, K.: Observational studies versus randomized controlled trials: avenues to causal inference in nephrology. Adv. Chronic Kidney Dis. 19(1), 11–18 (2012)
Lazarou, J., Pomeranz, B.H., Corey, P.N.: Incidence of adverse drug reactions in hospitalized patients: a meta-analysis of prospective studies. JAMA 279(15), 1200–1205 (1998)
Li, J., Le, T.D., Liu, L., Liu, J., Jin, Z., Sun, B.: Mining causal association rules. In: Data Mining Workshops (ICDMW), 2013 IEEE 13th International Conference on, pp. 114–123. IEEE (2013)
Liu, M., et al.: Determining molecular predictors of adverse drug reactions with causality analysis based on structure learning. J. Am. Med. Inform. Assoc. 21(2), 245–251 (2014)
Ma, S., Li, J., Liu, L., Le, T.D.: Mining combined causes in large data sets. Knowl.-Based Syst. 92, 104–111 (2016)
McHugh, M.L.: The chi-square test of independence. Biochemia medica: Biochemia medica 23(2), 143–149 (2013)
Norén, G.N., Orre, R., Bate, A., Edwards, I.R.: Duplicate detection in adverse drug reaction surveillance. Data Min. Knowl. Disc. 14(3), 305–328 (2007). https://doi.org/10.1007/s10618-006-0052-8
Palleria, C.: Pharmacokinetic drug-drug interaction and their implication in clinical management. J. Res. Med. Sci. 18(7), 601 (2013)
Pearl, J.: Causality. Cambridge University Press, Cambridge (2009)
Qin, X., Kakar, T., Wunnava, S., Rundensteiner, E.A., Cao, L.: Maras: signaling multi-drug adverse reactions. In: Proceedings of the 23rd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, pp. 1615–1623. ACM (2017)
Quinn, D., Day, R.: Drug interactions of clinical importance. Drug Saf. 12(6), 393–452 (1995)
Spirtes, P., et al.: Causation, Prediction and Search. MIT press, Cambridge (2000)
Subpaiboonkit, S., Li, X., Zhao, X., Scells, H., Zuccon, G.: Causality discovery with domain knowledge for drug-drug interactions discovery. In: Li, J., Wang, S., Qin, S., Li, X., Wang, S. (eds.) ADMA 2019. LNCS (LNAI), vol. 11888, pp. 632–647. Springer, Cham (2019). https://doi.org/10.1007/978-3-030-35231-8_46
Van Puijenbroek, E.P., Egberts, A.C., Meyboom, R.H., Leufkens, H.G.: Signalling possible drug-drug interactions in a spontaneous reporting system: delay of withdrawal bleeding during concomitant use of oral contraceptives and itraconazole. Br. J. Clin. Pharmacol. 47(6), 689–693 (1999)
Ventola, C.L.: Big data and pharmacovigilance: data mining for adverse drug events and interactions. Pharm. Ther. 43(6), 340 (2018)
Waldmann, M.R., Martignon, L.: A Bayesian network model of causal learning. In: Proceedings of the twentieth annual conference of the Cognitive Science Society, pp. 1102–1107 (1998)
Xiang, Y., et al.: Efficiently mining adverse event reporting system for multiple drug interactions. AMIA Summits Transl. Sci. Proc. 2014, 120 (2014)
Zhan, C., Roughead, E., Liu, L., Pratt, N., Li, J.: Detecting high-quality signals of adverse drug-drug interactions from spontaneous reporting data. J. Biomed. Inform. 112, 103603 (2020)
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Subpaiboonkit, S., Li, X., Zhao, X., Zuccon, G. (2022). Causality Discovery Based on Combined Causes and Multiple Causes in Drug-Drug Interaction. In: Chen, W., Yao, L., Cai, T., Pan, S., Shen, T., Li, X. (eds) Advanced Data Mining and Applications. ADMA 2022. Lecture Notes in Computer Science(), vol 13725. Springer, Cham. https://doi.org/10.1007/978-3-031-22064-7_5
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