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The Supervised Semantic Similarity Toolkit

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The Semantic Web: ESWC 2022 Satellite Events (ESWC 2022)

Part of the book series: Lecture Notes in Computer Science ((LNCS,volume 13384))

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Abstract

Knowledge graph-based semantic similarity measures have been used in several applications. Although knowledge graphs typically describe entities according to different semantic aspects modeled in ontologies, state-of-the-art semantic similarity measures are general-purpose since they consider the whole graph or depend on expert knowledge for fine-tuning.

We present a novel toolkit that can tailor aspect-oriented semantic similarity measures to fit a particular view on similarity. It starts by identifying the semantic aspects, then computes similarities for each semantic aspect, and finally uses a supervised machine learning method to learn a supervised semantic similarity according to the similarity proxy. The toolkit combines six taxonomic semantic similarity and four embedding similarity measures and provides baseline evaluation approaches.

This extended abstract is related to the paper “Towards Supervised Biomedical Semantic Similarity” accepted to the SeWeBMeDA 2022 but focuses on our work’s technical contribution whereas the workshop submission focuses on the use case for biomedical informatics.

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Notes

  1. 1.

    https://github.com/liseda-lab/Supervised-SS.

  2. 2.

    https://webfiles.uci.edu/mdlee/LeePincombeWelsh.zip.

References

  1. Bordes, A., Usunier, N., Garcia-Durán, A., Weston, J., Yakhnenko, O.: Translating embeddings for modeling multi-relational data. In: Proceedings of the 26th International Conference on NIPS (2013)

    Google Scholar 

  2. Cardoso, C., Sousa, R.T., Köhler, S., Pesquita, C.: A collection of benchmark data sets for knowledge graph-based similarity in the biomedical domain. Database 2020, baaa078 (2020)

    Article  Google Scholar 

  3. Chen, J., Hu, P., Jimenez-Ruiz, E., Holter, O.M., Antonyrajah, D., Horrocks, I.: OWL2Vec*: embedding of owl ontologies. Mach. Learn. 11, 1–33 (2021)

    MathSciNet  MATH  Google Scholar 

  4. Pesquita, C., Faria, D., Bastos, H., Falcao, A., Couto, F.: Evaluating GO-based semantic similarity measures. In: Proceedings of the 10th Annual Bio-Ontologies (2007)

    Google Scholar 

  5. Resnik, P.: Using information content to evaluate semantic similarity in a taxonomy. In: Proceedings of the 14th International Joint Conference on AI (1995)

    Google Scholar 

  6. Ristoski, P., Paulheim, H.: RDF2Vec: RDF graph embeddings for data mining. In: Groth, P., et al. (eds.) ISWC 2016. LNCS, vol. 9981, pp. 498–514. Springer, Cham (2016). https://doi.org/10.1007/978-3-319-46523-4_30

    Chapter  Google Scholar 

  7. Seco, N., Veale, T., Hayes, J.: An intrinsic information content metric for semantic similarity in WordNet. In: Proceedings of the 16th European Conference on AI (2004)

    Google Scholar 

  8. Sousa, R.T., Silva, S., Pesquita, C.: Evolving knowledge graph similarity for supervised learning in complex biomedical domains. BMC Bioinform. 21, 1–19 (2020)

    Article  Google Scholar 

  9. Yang, B., tau Yih, W., He, X., Gao, J., Deng, L.: Embedding entities and relations for learning and inference in knowledge bases (2015)

    Google Scholar 

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Acknowledgements

This work was funded by FCT through LASIGE Research Unit (UIDB/00408/2020, UIDP/00408/2020); projects GADgET (DSAIPA/DS/0022/2018) and BINDER (PTDC/CCI-INF/29168/2017); PhD grant SFRH/BD/145377/2019. It was also partially supported by the KATY project funded by European Union’s Horizon 2020 research and innovation programme (GA 101017453).

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Correspondence to Rita T. Sousa .

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Sousa, R.T., Silva, S., Pesquita, C. (2022). The Supervised Semantic Similarity Toolkit. In: Groth, P., et al. The Semantic Web: ESWC 2022 Satellite Events. ESWC 2022. Lecture Notes in Computer Science, vol 13384. Springer, Cham. https://doi.org/10.1007/978-3-031-11609-4_8

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  • DOI: https://doi.org/10.1007/978-3-031-11609-4_8

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  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-031-11608-7

  • Online ISBN: 978-3-031-11609-4

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