Skip to main content

Genetic Diversity in Amaranth and Its Close Relatives

  • Chapter
  • First Online:
The Amaranth Genome

Abstract

Amaranthus (Amaranthaceae) generally known as amaranth is an annual herbaceous genus, grown under diverse agro-climatic conditions. It has many species carrying nutraceutical properties with the potential to add values to the food, cosmetic, and pharmaceutical industries. According to their usage, amaranths are broadly classified into the grain, vegetable, weed, and wild type. This chapter helps in the understanding of intra- and inter-specific diversity present in amaranths, evaluated by morphological, biochemical, cytological, and molecular approaches. The understanding of genetic diversity in amaranth breeding programs support in identifying diverse parents to generate segregating population with genetic variability for introgression of desired agronomic traits and to develop high yielding elite varieties of amaranth.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 149.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 199.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 199.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Abbreviations

AFLP:

Amplified Fragment Length Polymorphism

APMC:

Agricultural Produce Market Committee

ARS:

Agricultural Research Service

AUJ:

Agriculture University, Jodhpur

AVGRIS:

AVRDC Vegetable Genetic Resources Information System

DBSKKV:

Dr. Balasaheb Sawant Konkan Krishi Vidyapeeth

GBPUAT:

Govind Ballabh Pant University of Agriculture and Technology

IARI:

Indian Agricultural Research Institute

ICAR:

Indian Council of Agricultural Research

IIHR:

Indian Institute of Horticultural Research

INR:

Indian Rupee

ISSR:

Inter Simple Sequence Repeat

ITS:

Internal Transcribed Spacer

KAU:

Kerala Agricultural University

NBPGR:

National Bureau of Plant Genetic Resources

OUAT:

Odisha University of Agriculture and Technology

PCA:

Principal Component Analysis

RAPD:

Random Amplified Polymorphic DNA

RFLP:

Restriction Fragment Length Polymorphism

SDAU:

Sardarkrushinagar Dantiwada Agricultural University

SNP:

Single Nucleotide Polymorphism

SSR:

Simple Sequence Repeat

TNAU:

Tamil Nadu Agricultural University

UAS:

University of Agricultural Sciences

USDA:

United States Department of Agriculture

VPKAS:

Vivekananda Parvatiya Krishi Anusandhan Sansthan

References

  • Adhikary D, Pratt DB (2015) Morphologic and taxonomic analysis of the weedy and cultivated Amaranthus hybridus species complex. Syst Bot 40(2):604–610. https://doi.org/10.1600/036364415X688376

    Article  Google Scholar 

  • Ahammed AU, Rahman MM, Mian MAK (2013) Mutivariate analysis in stem amaranth (Amaranthus tricolor). Bangladesh J Plant Breed Genet 26(1):11–17. https://doi.org/10.3329/bjpbg.v26i1.19979

    Article  Google Scholar 

  • Andini R, Yoshida S, Yoshida Y, Ohsawa R (2013) Amaranthus genetic resources in Indonesia: morphological and protein content assessment in comparison with worldwide amaranths. Genet Resour Crop Evol 60(7):2115–2128. https://doi.org/10.1007/s10722-013-9979-y

    Article  CAS  Google Scholar 

  • Anuja S, Mohideen MK (2007) Genetic diversity for green yield characteristics in vegetable amaranthus (Amaranthus spp.). Asian J Hort 2(1):158–160

    Google Scholar 

  • APMC-Palanpur (2020) The agricultural produce market committee: Amaranth income-price, 2020

    Google Scholar 

  • AVGRIS (2020) The AVRDC vegetable genetic resources information system (AVGRIS). http://seed.worldveg.org/search/characterization/amaranthus. Accessed 15 Aug 2020

  • Bao-Hua S, Xue-Jie Z, Fa-Zeng L, Peng W (2002) Chromosome numbers of 14 species in Amaranthus from China. J Syst Evol 40(5):428–432

    Google Scholar 

  • Becker R, Wheeler EL, Lorenz K, Stafford AE, Grosjean OK, Betschart AA, Saunders RM (1981) A compositional study of amaranth grain. J Food Sci 46(4):1175–1180

    Article  CAS  Google Scholar 

  • Behera B, Patnaik SN (1974) Cytotaxonomic studies in the family Amaranthaceae. Cytologia 39(1):121–131

    Article  Google Scholar 

  • Brenan JPM, Townsend CC (1980) Proposal to reject Amaranthus blitum L. (Amaranthaceae) under Art. 69 in favour of A. lividus L. Taxon 29:695–696

    Article  Google Scholar 

  • Brenner DM, Baltensperger DD, Kulakow PA, Lehmann JW, Myers RL, Slabbert MM, Sleugh BB (2000) Genetic resources and breeding of Amaranthus. Plant Breed Rev 19:227–285

    CAS  Google Scholar 

  • Cai Y, Sun M, Wu H, Huang R, Corke H (1998) Characterization and quantification of betacyanin pigments from diverse Amaranthus species. J Agric Food Chem 46(6):2063–2070

    Article  CAS  Google Scholar 

  • Chan KF, Sun M (1997) Genetic diversity and relationships detected by isozyme and RAPD analysis of crop and wild species of Amaranthus. Theor Appl Genet 95(5–6):865–873

    Article  CAS  Google Scholar 

  • Chandi A, Milla-Lewis SR, Jordan DL, York AC, Burton JD, Zuleta MC, Whitaker JR, Culpepper AS (2013) Use of AFLP markers to assess genetic diversity in Palmer amaranth (Amaranthus palmeri) populations from North Carolina and Georgia. Weed Sci 61(1):136–145. https://doi.org/10.1614/WS-D-12-00053.1

    Article  CAS  Google Scholar 

  • Chaney L, Mangelson R, Ramaraj T, Jellen EN, Maughan PJ (2016) The complete chloroplast genome sequences for four Amaranthus species (Amaranthaceae). Appl Plant Sci 4(9):1600063. https://doi.org/10.3732/apps.1600063

    Article  Google Scholar 

  • Coelho LM, Silva PM, Martins JT, Pinheiro AC, Vicente AA (2018) Emerging opportunities in exploring the nutritional/functional value of amaranth. Food Funct 9(11):5499–5512. https://doi.org/10.1039/C8FO01422A

    Article  CAS  PubMed  Google Scholar 

  • Cole JN (1979) Amaranth from the past for the future. Rodale Press

    Google Scholar 

  • Das S (2012a) Domestication, phylogeny and taxonomic delimitation in underutilized grain Amaranthus (Amaranthaceae)—a status review. Feddes Repert 123(4):273–282. https://doi.org/10.1002/fedr.201200017

    Article  Google Scholar 

  • Das S (2012b) Systematics and taxonomic delimitation of vegetable, grain and weed amaranths: a morphological and biochemical approach. Genet Resour Crop Evol 59(2):289–303. https://doi.org/10.1007/s10722-011-9684-7

    Article  Google Scholar 

  • Das S (2016) Amaranthus: a promising crop of future. Springer, Singapore

    Book  Google Scholar 

  • Desai SR (1971) Morphological and cytological studies on Amaranthaceae. Cytologia 36(2):349–353

    Article  Google Scholar 

  • Dua RP, Raiger HL, Phogat BS, Sharma SK (2009) Underutilized crops: Improved varieties and cultivation practices. New Delhi, NBPGR, p 66

    Google Scholar 

  • Erum S, Naeemullah M, Masood S, Qayyum A, Rabbani MA (2012) Genetic divergence in Amaranthus collected from Pakistan. J Anim Plant Sci 22(3):653–658

    Google Scholar 

  • Gelotar MJ, Dharajiya DT, Solanki SD, Prajapati NN, Tiwari KK (2019) Genetic diversity analysis and molecular characterization of grain amaranth genotypes using inter simple sequence repeat (ISSR) markers. Bull Natl Res Cent 43(1):103. https://doi.org/10.1186/s42269-019-0146-2

    Article  Google Scholar 

  • GENESYS (2020) GENESYS: global portal on plant genetic resources. https://www.genesys-pgr.org/wiews/USA020. Accessed 15 Aug 2020

  • Gerrano AS, Van Rensburg WSJ, Adebola PO (2015) Genetic diversity of Amaranthus species in South Africa. S Afr J Plant Soil 32(1):39–46. https://doi.org/10.1080/02571862.2014.973069

    Article  Google Scholar 

  • Gerrano AS, Van Rensburg WJ, Mavengahama S, Bairu M, Venter S, Adebola PO (2017) Qualitative morphological diversity of Amaranthus species. J Trop Agric 55(1):12–20

    Google Scholar 

  • Grant WF (1959a) Cytogenetic studies in Amaranthus: II. Natural interspecific hybridization between Amaranthus dubius and A. spinosus. Can J Bot 37(5):1063–1070

    Google Scholar 

  • Grant WF (1959b) Cytogenetic studies in Amaranthus: III. Chromosome numbers and phylogenetic aspects. Can J Genet Cytol 1(4):313–328

    Google Scholar 

  • Grover A, Sharma PC (2016) Development and use of molecular markers: past and present. Critic Rev Biotechnol 36(2):290–302. https://doi.org/10.3109/07388551.2014.959891

    Article  CAS  Google Scholar 

  • Gueco LS, Borromeo T, De Guzman C (2016) Diversity in the morphology of Amaranth (Amaranthus sp.) germplasm collection in the Philippines. Asian J Agric Food Sci 4(2):73–79

    Google Scholar 

  • Hamrick JL, Godt MJW (1996) Conservation genetics of endemic plant species. In: Avise JC, Hamrick JL (eds) Conservation genetics: case histories from nature. Chapman and Hall, New York, pp 281–304

    Chapter  Google Scholar 

  • Iamonico D (2012) Amaranthus powellii subsp. cacciatoi comb. et stat. nov. (Amaranthaceae). Nord J Bot 30(1):12–16

    Google Scholar 

  • ICAR-NBPGR (2020) ICAR-NBPGR: Status of base collections in National GeneBank. http://www.nbpgr.ernet.in/Research_Projects/Base_Collection_in_NGB.aspx. Accessed 15 Aug 2020

  • Jacobsen SE, Mujica A (2003) The genetic resources of Andean grain amaranths (Amaranthus caudatus L., A. cruentus L. and A. hipochondriacus L.) in America. Plant Genet Resour Newsl 133:41–44

    Google Scholar 

  • Jimenez FR, Maughan PJ, Alvarez A, Kietlinski KD, Smith SM, Pratt DB, Elzinga DB, Jellen EN (2013) Assessment of genetic diversity in Peruvian amaranth (Amaranthus caudatus and A. hybridus) germplasm using single nucleotide polymorphism markers. Crop Sci 53(2):532–541. https://doi.org/10.2135/cropsci2012.07.0413

  • Jimoh MO, Afolayan AJ, Lewu FB (2018) Suitability of Amaranthus species for alleviating human dietary deficiencies. S Afr J Bot 115:65–73. https://doi.org/10.1016/j.sajb.2018.01.004

    Article  CAS  Google Scholar 

  • Joshi DC, Sood S, Hosahatti R, Kant L, Pattanayak A, Kumar A, Yadav D, Stetter MG (2018) From zero to hero: the past, present and future of grain amaranth breeding. Theor Appl Genet 131(9):1807–1823. https://doi.org/10.1007/s00122-018-3138-y

    Article  CAS  PubMed  Google Scholar 

  • KAU (2020) Kerala Agricultural University: varieties released. http://www.kau.in/basic-page/varieties-released. Accessed 15 Aug 2020

  • Khaing AA, Moe KT, Chung JW, Baek HJ, Park YJ (2013) Genetic diversity and population structure of the selected core set in Amaranthus using SSR markers. Plant Breed 132(2):165–173. https://doi.org/10.1111/pbr.12027

    Article  Google Scholar 

  • Kietlinski KD, Jimenez F, Jellen EN, Maughan PJ, Smith SM, Pratt DB (2014) Relationships between the weedy Amaranthus hybridus (Amaranthaceae) and the grain amaranths. Crop Sci 54(1):220–228. https://doi.org/10.2135/cropsci2013.03.0173

    Article  Google Scholar 

  • Krulj J, Brlek T, Pezo L, Brkljača J, Popović S, Zeković Z, Bodroža Solarov M (2016) Extraction methods of Amaranthus sp. grain oil isolation. J Sci Food Agric 96(10):3552–3558. https://doi.org/10.1002/jsfa.7540

  • Legaria S (2010) Genetic diversity in some species of amaranth (Amaranthus spp.). Rev Fitotec Mex 33(2):89–95

    Google Scholar 

  • Mandák B, Zákravský P, Dostál P, Plačková I (2011) Population genetic structure of the noxious weed Amaranthus retroflexus in Central Europe. Flora 206(8):697–703. https://doi.org/10.1016/j.flora.2011.01.010

    Article  Google Scholar 

  • Martinez-Lopez A, Millan-Linares MC, Rodriguez-Martin NM, Millan F, Montserrat-de la Paz S (2020) Nutraceutical value of kiwicha (Amaranthus caudatus L.). J Funct Foods 65:103735. https://doi.org/10.1016/j.jff.2019.103735

  • Maughan PJ, Smith SM, Fairbanks DJ, Jellen EN (2011) Development, characterization, and linkage mapping of single nucleotide polymorphisms in the grain amaranths (Amaranthus sp.). The Plant Genome 4(1):92–101. https://doi.org/10.3835/plantgenome2010.12.0027

  • Milan PR (2008) Chromosome behaviour and fertility in induced polyploids of grain amaranths. Caryologia 61(3):199–205. https://doi.org/10.1080/00087114.2008.10589630

    Article  Google Scholar 

  • Nguyen DC, Tran DS, Tran TTH, Ohsawa R, Yoshioka Y (2019) Genetic diversity of leafy amaranth (Amaranthus tricolor L.) resources in Vietnam. Breed Sci 19050. https://doi.org/10.1270/jsbbs.19050

  • Oboh BO (2007) Multivariate analysis of the diversity among some Nigerian accessions of Amaranthus hybridus. Int J Plant Breed Genet 1(2):89–94

    Article  Google Scholar 

  • Oo WH, Park YJ (2013) Analysis of the genetic diversity and population structure of amaranth accessions from South America using 14 SSR markers. Korean J Crop Sci 58(4):336–346

    Article  Google Scholar 

  • Pagi N, Prajapati N, Pachchigar K, Dharajiya D, Solanki SD, Soni N, Patel P (2017) GGE biplot analysis for yield performance of grain amaranth genotypes across different environments in western India. J Exp Biol Agric Sci 5(3):368–376. https://doi.org/10.18006/2017.5(3).368.376

    Article  Google Scholar 

  • Pal M, Ohri D, Subramaniyam GV (2000) A new basic chromosome number for Amaranthus (Amaranthaceae). Cytologia 65(1):13–16. https://doi.org/10.1508/cytologia.65.13

    Article  Google Scholar 

  • Park YJ, Nishikawa T, Matsushima K, Minami M, Tomooka N, Nemoto K (2014) Molecular characterization and genetic diversity of the starch branching enzyme (SBE) gene from Amaranthus: the evolutionary origin of grain amaranths. Mol Breed 34(4):1975–1985. https://doi.org/10.1007/s11032-014-0156-6

    Article  CAS  Google Scholar 

  • Peter K, Gandhi P (2017) Rediscovering the therapeutic potential of Amaranthus species: a review. Egypt J Basic Appl Sci 4(3):196–205. https://doi.org/10.1016/j.ejbas.2017.05.001

    Article  Google Scholar 

  • Popa G, Cornea CP, Ciuca M, Babeanu N, Popa O, Marin D (2010) Studies on genetic diversity in Amaranthus species using the RAPD markers. Analele Univ din Oradea Fasc Biol 17(2):280–285

    Google Scholar 

  • Queirós M (1989) Estudos citotaxonómicos em Amaranthus de Portugal. Lazaroa 11:9–17

    Google Scholar 

  • Radwan SAA, Badr S, Mira MM, Helmy R (2014) Genetic variability and phylogenetic relationships in Amaranthus using karyotype. J Biotechnol Res 14:53–70

    Google Scholar 

  • Rastogi A, Shukla S (2013) Amaranth: a new millennium crop of nutraceutical values. Crit Rev Food Sci Nutr 53(2):109–125. https://doi.org/10.1080/10408398.2010.517876

    Article  CAS  PubMed  Google Scholar 

  • Raut VR, Dodake SS, Chimote VP (2014) Evaluation of genetic diversity in grain amaranth (Amaranthus hypochondriacus) at molecular level using ISSR markers. Ind J Agric Biochem 27(1):60–65

    CAS  Google Scholar 

  • Ray T, Roy SC (2009) Genetic diversity of Amaranthus species from the Indo-Gangetic plains revealed by RAPD analysis leading to the development of ecotype-specific SCAR marker. J Hered 100(3):338–347. https://doi.org/10.1093/jhered/esn102

    Article  CAS  PubMed  Google Scholar 

  • Reema S, Roy BK (2014) A new chromosome number for Amaranthus blitum. J N Biol Rep 3(2):111–114

    Google Scholar 

  • Sauer JD (1967) The grain amaranths and their relatives: a revised taxonomic and geographic survey. Ann Missouri Bot Gard 54(2):103–137

    Article  Google Scholar 

  • Sauer JD (1993) Historical geography of crop plants: a select roster. CRC Press

    Google Scholar 

  • Shankar R, Lal A, da Silva JAT, More TA (2012) Diversity analysis of fleshy leaf type Amaranthus for semi-arid ecosystems. Int J Plant Breed 6:27–33

    Google Scholar 

  • Sheidai M, Mohammadzadeh Z (2008) Cytogenetic study of Amaranthus L. species in Iran. Cytologia 73(1):1–7. https://doi.org/10.1508/cytologia.73.1

  • Shukla S, Bhargava A, Chatterjee A, Pandey AC, Mishra BK (2010) Diversity in phenotypic and nutritional traits in vegetable amaranth (Amaranthus tricolor), a nutritionally underutilised crop. J Sci Food Agric 90(1):139–144. https://doi.org/10.1002/jsfa.3797

    Article  CAS  PubMed  Google Scholar 

  • Shukla A, Srivastava N, Suneja P, Yadav SK, Hussain Z, Rana JC, Yadav S (2018) Untapped amaranth (Amaranthus spp.) genetic diversity with potential for nutritional enhancement. Genet Resour Crop Evol 65(1):243–253. https://doi.org/10.1007/s10722-017-0526-0

  • Singh B, Pandey S, Kumar J (2013) A comparative study of inter simple sequence repeat (ISSR), random amplified polymorphic DNA (RAPD) and simple sequence repeat (SSR) loci in assessing genetic diversity in Amaranthus. Indian J Genet Plant Breed 73:411–418. https://doi.org/10.5958/j.0975-6906.73.4.062

    Article  CAS  Google Scholar 

  • Singh N, Singh P, Shevkani K, Virdi AS (2019) Amaranth: potential source for flour enrichment. In: Preedy V, Watson R (eds) Flour and breads and their fortification in health and disease prevention. Academic Press, pp 123–135. https://doi.org/10.1016/b978-0-12-814639-2.00010-1

  • Štefúnová V, Bežo M, Žiarovská J, Ražná K (2015) Detection of the genetic variability of Amaranthus by RAPD and ISSR markers. Pak J Bot 47(4):1293–1301

    Google Scholar 

  • Suresh S, Chung JW, Cho GT, Sung JS, Park JH, Gwag JG, Baek HJ (2014) Analysis of molecular genetic diversity and population structure in Amaranthus germplasm using SSR markers. Pl Biosyst 148(4):635–644. https://doi.org/10.1080/11263504.2013.788095

    Article  Google Scholar 

  • Su-Young H, Cheon KS, Yoo KO, Hyun-Oh L, Mekapogu M, Cho KS (2019) Comparative analysis of the complete chloroplast genome sequences of three Amaranthus species. Plant Genet Resour 17(3):245–254. https://doi.org/10.1017/S1479262118000485

    Article  CAS  Google Scholar 

  • TNAU (2017) Lec 31: Origin, area, production, varieties, package of practices for amaranthus, palak and gogu. In: HORT 281—production technology of vegetables and flowers. Development of e-Course for B.Sc. (Agriculture). TNAU, Tamil Nadu, India, pp 283–293

    Google Scholar 

  • Transue DK, Fairbanks DJ, Robison LR, Andersen WR (1994) Species identification by RAPD analysis of grain amaranth genetic resources. Crop Sci 34(5):1385–1389

    Article  Google Scholar 

  • USDA, ARS, NPGS (2021) USDA, Agricultural Research Service, National Plant Germplasm System (NPGS), Germplasm Resources Information Network (GRIN-Taxonomy). National Germplasm Resources Laboratory, Beltsville, Maryland. https://npgsweb.ars-grin.gov/gringlobal/taxon/taxonomysearch. Accessed 19 Jan 2021

  • Venkatesh L, Murthy N, Nehru SD (2014) Analysis of genetic diversity in grain amaranth (Amaranthus spp.). Indian J Genet 74(4):522–525

    Google Scholar 

  • Viljoen E, Odeny DA, Coetzee MP, Berger DK, Rees DJ (2018) Application of chloroplast phylogenomics to resolve species relationships within the plant genus Amaranthus. J Mol Evol 86(3–4):216–239. https://doi.org/10.1007/s00239-018-9837-9

    Article  CAS  PubMed  Google Scholar 

  • Wang XQ, Park YJ (2013) Comparison of genetic diversity among amaranth accessions from south and Southeast Asia using SSR markers. J Korean Med Sci 21(3):220–228. https://doi.org/10.7783/KJMCS.2013.21.3.220

    Article  Google Scholar 

  • Wassom JJ, Tranel PJ (2005) Amplified fragment length polymorphism-based genetic relationships among weedy Amaranthus species. J Hered 96(4):410–416. https://doi.org/10.1093/jhered/esi065

    Article  CAS  PubMed  Google Scholar 

  • Wu X, Blair MW (2017) Diversity in grain amaranths and relatives distinguished by genotyping by sequencing (GBS). Front Plant Sci 8:1960. https://doi.org/10.3389/fpls.2017.01960

    Article  PubMed  PubMed Central  Google Scholar 

  • Xu F, Sun M (2001) Comparative analysis of phylogenetic relationships of grain amaranths and their wild relatives (Amaranthus; Amaranthaceae) using internal transcribed spacer, amplified fragment length polymorphism, and double-primer fluorescent inter simple sequence repeat markers. Mol Phylogenet Evol 21(3):372–387. https://doi.org/10.1006/mpev.2001.1016

    Article  CAS  PubMed  Google Scholar 

  • Ziarati P, Alaedini S (2014) The phytoremediation technique for cleaning up contaminated soil by Amaranthus sp. J Environ Anal Toxicol 4(208):2161-0525. https://doi.org/10.4172/2161-0525.1000208

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2021 The Author(s), under exclusive license to Springer Nature Switzerland AG

About this chapter

Check for updates. Verify currency and authenticity via CrossMark

Cite this chapter

Dharajiya, D.T., Singh, A.K., Tiwari, K.K., Prajapati, N.N. (2021). Genetic Diversity in Amaranth and Its Close Relatives. In: Adhikary, D., Deyholos, M.K., Délano-Frier, J.P. (eds) The Amaranth Genome. Compendium of Plant Genomes. Springer, Cham. https://doi.org/10.1007/978-3-030-72365-1_6

Download citation

Publish with us

Policies and ethics