Abstract
A recently developed Pseudomonas syringae recombineering system simplifies the procedure for installing specific mutations at a chosen genomic locus. The procedure involves transforming P. syringae cells expressing recombineering functions with a PCR product that contains desired changes flanked by sequences homologous to a target location. Cells transformed with the substrate undergo homologous recombination between the genomic DNA and the recombineering substrate. The recombinants are found by selection for traits carried by the recombineering substrate, usually antibiotic resistance.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Murphy KC (1998) Use of bacteriophage lambda recombination functions to promote gene replacement in escherichia coli. J Bacteriol 180(8):2063–2071
Zhang Y, Buchholz F, Muyrers JP, Stewart AF (1998) A new logic for DNA engineering using recombination in escherichia coli. Nat Genet 20(2):123–128
Dutra BE, Sutera VA Jr, Lovett ST (2007) RecA-independent recombination is efficient but limited by exonucleases. Proc Natl Acad Sci U S A 104(1):216–221
Winans SC, Elledge SJ, Krueger JH, Walker GC (1985) Site-directed insertion and deletion mutagenesis with cloned fragments in Escherichia coli. J Bacteriol 161(3):1219–1221
Lovett ST, Hurley RL, Sutera VA Jr, Aubuchon RH, Lebedeva MA (2002) Crossing over between regions of limited homology in Escherichia coli. RecA-dependent and RecA-independent pathways. Genetics 160(3):851–859
Cassuto E, Radding CM (1971) Mechanism for the action of lambda exonuclease in genetic recombination. Nat New Biol 229(1):13–16
Little JW (1967) An exonuclease induced by bacteriophage lambda. II. Nature of the enzymatic reaction. J Biol Chem 242(4):679–686
Kmiec E, Holloman WK (1981) Beta protein of bacteriophage lambda promotes renaturation of DNA. J Biol Chem 256(24):12636–12639
Karakousis G, Ye N, Li Z, Chiu SK, Reddy G, Radding CM (1998) The beta protein of phage lambda binds preferentially to an intermediate in DNA renaturation. J Mol Biol 276(4):721–731
Ellis HM, Yu D, DiTizio T, Court DL (2001) High efficiency mutagenesis, repair, and engineering of chromosomal DNA using single-stranded oligonucleotides. Proc Natl Acad Sci U S A 98(12):6742–6746
Lesic B, Rahme LG (2008) Use of the lambda Red recombinase system to rapidly generate mutants in Pseudomonas aeruginosa. BMC Mol Biol 9:20
Datta S, Costantino N, Zhou X, Court DL (2008) Identification and analysis of recombineering functions from Gram-negative and Gram-positive bacteria and their phages. Proc Natl Acad Sci U S A 105(5):1626–1631
Swingle B, Bao Z, Markel E, Chambers A, Cartinhour S (2010) Recombineering using RecTE from pseudomonas syringae. Appl Environ Microbiol 76(15):4960–4968
van Kessel JC, Hatfull GF (2007) Recombineering in mycobacterium tuberculosis. Nat Methods 4(2):147–152
van Kessel JC, Hatfull GF (2008) Efficient point mutagenesis in mycobacteria using single-stranded DNA recombineering: characterization of antimycobacterial drug targets. Mol Microbiol 67(5):1094–1107
van Kessel JC, Marinelli LJ, Hatfull GF (2008) Recombineering mycobacteria and their phages. Nat Rev Microbiol 6(11):851–857
van Pijkeren JP, Britton RA (2012) High efficiency recombineering in lactic acid bacteria. Nucleic Acids Res 40(10):e76. doi:gks147 [pii] 10.1093/nar/gks147
van Pijkeren JP, Neoh KM, Sirias D, Findley AS, Britton RA (2012) Exploring optimization parameters to increase ssDNA recombineering in Lactococcus lactis and Lactobacillus reuteri. Bioengineered 3(4):209–217. doi: 21049 [pii]
Sharan SK, Thomason LC, Kuznetsov SG, Court DL (2009) Recombineering: a homologous recombination-based method of genetic engineering. Nat Protoc 4(2):206–223
King EO, Ward MK, Raney DE (1954) Two simple media for the demonstration of pyocyanin and fluorescein. J Lab Clin Med 44(2):301–307
Hanahan D (1983) Studies on transformation of Escherichia coli with plasmids. J Mol Biol 166(4):557–580
Ried JL, Collmer A (1987) An nptI-sacB-sacR cartridge for constructing directed, unmarked mutations in gram-negative bacteria by marker exchange-eviction mutagenesis. Gene 57(2–3):239–246
Acknowledgments
Mention of trade names or commercial products in this publication is solely for the purpose of providing specific information and does not imply recommendation or endorsement by the U.S. Department of Agriculture. The USDA is an equal opportunity provider and employer.
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2014 Springer Science+Business Media, LLC
About this protocol
Cite this protocol
Swingle, B. (2014). RecTEPsy-Mediated Recombineering in Pseudomonas syringae . In: Storici, F. (eds) Gene Correction. Methods in Molecular Biology, vol 1114. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-62703-761-7_1
Download citation
DOI: https://doi.org/10.1007/978-1-62703-761-7_1
Published:
Publisher Name: Humana Press, Totowa, NJ
Print ISBN: 978-1-62703-760-0
Online ISBN: 978-1-62703-761-7
eBook Packages: Springer Protocols