Abstract
MicroRNAs play an important role in gene regulation and disease etiology and are blood-based biomarkers of diseases. Here, we describe a protein-facilitated affinity capillary electrophoresis (ProFACE) method for ultra-sensitive direct miRNA detection as low as 300,000 molecules in 1 mL of blood serum, using single-stranded DNA binding protein (SSB) and double-stranded RNA binding protein (p19) as separation enhancers. This method utilizes either the selective binding of SSB to a fluorescent single-stranded DNA/RNA probe or the binding of p19 to miRNA–RNA probe duplex.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW et al (2003) The microRNAs of Caenorhabditis elegans. Genes Dev 17:991–1008
Pena JT, Sohn-Lee C, Rouhanifard SH, Ludwig J, Hafner M, Mihailovic A et al (2009) miRNA in situ hybridization in formaldehyde and EDC–fixed tissues. Nat Methods 6:139–141
Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T (2001) Identification of novel genes coding for small expressed RNAs. Science 294:853–858
Chen J, Lozach J, Garcia EW, Barnes B, Luo S, Mikoulitch I et al (2008) Highly sensitive and specific microRNA expression profiling using BeadArray technology. Nucleic Acids Res 36:e87
Krichevsky AM, King KS, Donahue CP, Khrapko K, Kosik KS (2003) MicroRNA array reveals extensive regulation of microRNAs during brain development. RNA 9:1274–1281
Chen C, Ridzon DA, Broomer AJ, Zhou Z, Lee DH, Nguyen JT et al (2005) Real-time quantification of microRNAs by stem-loop RT-PCR. Nucleic Acids Res 33:e179
Klein D (2002) Quantification using real-time PCR technology: applications and limitations. Trends Mol Med 8:257–260
Gassman E, Kuo JE, Zare RN (1985) Electrokinetic separation of chiral compounds. Science 230:813–814
Berezovski M, Krylov SN (2003) Using DNA-binding proteins as an analytical tool. J Am Chem Soc 125:13451–13454
Krauss G, Sindermann H, Schomburg U, Maass G (1981) Escherichia coli single-strand deoxyribonucleic acid binding protein: stability, specificity, and kinetics of complexes with oligonucleotides and deoxyribonucleic acid. Biochemistry 20:5346–5352
Overman LB, Bujalowski W, Lohman TM (1988) Equilibrium binding of Escherichia coli single-strand binding protein to single-stranded nucleic acids in the (SSB) 65 binding mode. Biochemistry 27:456–471
Khan N, Cheng J, Pezack JP, Berezovski MV (2011) Quantitative analysis of microRNA in blood serum with protein-facilitated affinity capillary electrophoresis. Anal Chem 83:6196–6201
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2013 Springer Science+Business Media, New York
About this protocol
Cite this protocol
Berezovski, M.V., Khan, N. (2013). Quantitative Analysis of MicroRNA in Blood Serum with Protein-Facilitated Affinity Capillary Electrophoresis. In: Kolpashchikov, D., Gerasimova, Y. (eds) Nucleic Acid Detection. Methods in Molecular Biology, vol 1039. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-62703-535-4_20
Download citation
DOI: https://doi.org/10.1007/978-1-62703-535-4_20
Published:
Publisher Name: Humana Press, Totowa, NJ
Print ISBN: 978-1-62703-534-7
Online ISBN: 978-1-62703-535-4
eBook Packages: Springer Protocols