Abstract
Improvement in biorefining technologies coupled with development of novel fermentation strategies and analysis will be paramount in establishing supplementary and sustainable biofuel pathways. Oleaginous microorganisms that are capable of accumulating triacylglycerides (TAGs) and fatty acid methyl esters (FAMEs), such as Rhodococcus and Yarrowia species, can be used to produce second-generation biofuels from non-food competing carbon sources. These “microbiorefineries” provide a pathway to upgrade agricultural and industrial waste streams to fungible fuels or precursors to chemicals and materials. Here we provide a general overview on cultivating Rhodococcus and Yarrowia on agro-waste/industrial biomass pretreatment waste streams to produce single-cell oils/lipids and preparing samples for FAME detection.
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References
Miao X, Wu Q (2006) Biodiesel production from heterotrophic microalgal oil. Bioresour Technol 97(6):841–846
Deeba FV, Pruthi V, Negi YS (2016) Converting paper mill sludge into neutral lipids by oleaginous yeast Cryptococcus vishniaccii for biodiesel production. Bioresour Technol 213:96–102
Lamers D, van Biezen N, Martens D, Peters L, Van de Zilver E, Jacobs-van Druemel N, Wijffels RH, Lokman C (2016) Selection of oleaginous yeasts for fatty acid production. BMC Biotechnol 16(1):45
Abghari A, Chen S (2014) Yarrowia lipolytica as an oleaginous cell factory platform for production of fatty acid-based biofuel and bioproducts. Front Energy Res 2(21). https://doi.org/10.3389/fenrg.2014.00021
Ledesma-Amaro R, Nicaud J-M (2016) Metabolic engineering for expanding the substrate range of Yarrowia lipolytica. Trends Biotechnol 34(10):798–809
Beopoulos A, Cescut J, Haddouche R, Uribelarrea J-J, Molina-Jouve C, Nicaud J-M (2009) Yarrowia lipolytica as a model for bio-oil production. Prog Lipid Res 48(6):375–387
Beopoulos A, Nicaud JM, Gailardin C (2011) An overview of lipid metabolism in yeasts and its impact on biotechnological processes. Appl Microbiol Biotechnol 90(4):1193–1206
Kosa M, Ragauskas AJ (2011) Lipids from heterotrophic microbes: advances in metabolism research. Trends Biotechnol 29(2):53–61
Kosa M, Ragauskas AJ (2012) Bioconversion of lignin model compounds with oleaginous rhodococci. Appl Microbiol Biotechnol 93(2):891–900
Kosa M, Ragauskas AJ (2013) Lignin to lipid bioconversion by oleaginous rhodococci. Green Chem 15(8):2070–2074
Wei Z, Zeng G, Huang F, Kosa M, Huang D, Ragauskas AJ (2015) Bioconversion of oxygen-pretreated Kraft lignin to microbial lipid with oleaginous Rhodococcus opacus DSM 1069. Green Chem 17(5):2784–2789
Wei Z, Zeng G, Huang F, Kosa M, Sun Q, Meng X, Huang D, Ragauskas AJ (2015) Microbial lipid production by oleaginous rhodococci cultured in lignocellulosic autohydrolysates. Appl Microbiol Biotechnol 99(17):7369–7377
Wei Z, Zeng G, Kosa M, Huang D, Ragauskas AJ (2015) Pyrolysis oil-based lipid production as biodiesel feedstock by Rhodococcus opacus. Appl Biochem Biotechnol 175(2):1234–1246
Le RK, Wells T, Das P, Meng X, Stoklosa RJ, Bhalla A, Hodge DB, Yuan JS, Tagauskas AJ (2017) Conversion of corn stover alkaline pre-treatment waste streams into biodiesel via rhodococci. RSC Adv 7(7):4108–4115
Alvarez H, Steinbüchel A (2002) Triacylglycerols in prokaryotic microorganisms. Appl Microbiol Biotechnol 60(4):367–376
Alvarez HM, Kalscheuer R, Steinbüchel A (1997) Accumulation of storage lipids in species of Rhodococcus and Nocardia and effect of inhibitors and polyethylene glycol. Eur J Lip Sci Technol 99(7):239–246
Gomez JA, Höffner K, Barton PI (2016) From sugars to biodiesel using microalgae and yeast. Green Chem 18(2):461–475
Meng X, Yang J, Xu X, Zhang L, Nie Q, Xian M (2009) Biodiesel production from oleaginous microorganisms. Renew Energy 34(1):1–5
Pimentel D, Patzek PW (2005) Ethanol production using corn, switchgrass, and wood; biodiesel production using soybean and sunflower. Nat Resour Res 14(1):65–76
Beckham GT, Johnson CW, Karp EM, Salvachua D, Vardon DR (2016) Opportunities and challenges in biological lignin valorization. Curr Opin Biotechnol 42:40–53
Alvarez HM, Kalscheuer R, Steinbuchel A (2000) Accumulation and mobilization of storage lipids by Rhodococcus opacus PD630 and Rhodococcus ruber NCIMB 40126. Appl Microbiol Biotechnol 54:218–223
Wells T, Ragauskas AJ (2012) Biotechnological opportunities with the β-ketoadipate pathway. Trends Biotechnol 30:627–637
Schlegel H, Kaltwasser H, Gottschalk G (1961) A submersion method for culture of hydrogen-oxidizing bacteria: growth physiological studies. Arch Microbiol 38(3):209–222
Yang X, Jin G, Gong Z, Shen H, Song Y, Bai F, Zhao ZK (2014) Simultaneous utilization of glucose and mannose from spent yeast cell mass for lipid production by Lipomyces starkeyi. Bioresour Technol 158:383–387
Nambou K, Zhao C, Wei L, Chen J, Imanaka T, Hua Q (2014) Designing of a cheap to run fermentation platform for an enhanced production of single cell oil from Yarrowia lipolytica DSM3286 as a potential feedstock for biodiesel. Bioresour Technol 173:324–333
Daggett P-M, Simione FP (1987) Method of culturing freeze-dried microorganisms. US Patent US4672037A
Berny J-F, Hennebert G (1991) Viability and stability of yeast cells and filamentous fungus spores during freeze-drying: effects of protectants and cooling rates. Mycologia 83:805–815
Barth G, Gaillardin C (1996) Yarrowia lipolytica. In: Nonconventional yeasts in biotechnology. Springer, New York, pp 313–388
Gajdoš P, Nicaud JM, Rossignol T, Čertík M (2015) Single cell oil production on molasses by Yarrowia lipolytica strains overexpressing dga2 in multicopy. Appl Microbiol Biotechnol 99(19):8065–8074
Blagodatskaj V, Kockova-Kratochvilova K (1973) The heterogeneity of the species Candida lipolytica Candida pseudolipolytica new species and Candida lipolytica var thermotolerans new variety. Biologia (Bratislava) 28(9):709–716
Barnett JA, Payne RW, Yarrow D (1983) Yeasts: characteristics and identification. Cambridge University Press, Cambridge
Qiao K, Wasylenko TM, Zhou K, Xu P, Stephanopoulos G (2017) Lipid production in Yarrowia lipolytica is maximized by engineering cytosolic redox metabolism. Nat Biotechnol 35(2):173–177
Wei Y, Siewers V, Nielsen J (2017) Cocoa butter-like lipid production ability of non-oleaginous and oleaginous yeasts under nitrogen-limited culture conditions. Appl Microbiol Biotechnol 101(9):3577–3585
Xu P, Qiao K, Ahn WS, Stephanopoulos G (2016) Engineering Yarrowia lipolytica as a platform for synthesis of drop-in transportation fuels and oleochemicals. Proc Natl Acad Sci U S A 113(39):10848–10853
Zhang H, Wu C, Wu Q, Dai J, Song Y (2016) Metabolic flux analysis of lipid biosynthesis in the yeast Yarrowia lipolytica using 13C-labeled glucose and gas chromatography-mass spectrometry. PLoS One 11(7):E0159187
Friedlander J, Tsakraklides V, Kamineni A, Greenhagen EH, Consiglio AL, MacEwen K, Crabtree DV, Afshar J, Nugent RL, Hamilton MA, Shaw AJ, Suth CR, Stephanopoulos G, Brevnova EE (2016) Engineering of a high lipid producing Yarrowia lipolytica strain. Biotechnol Biofuels 9(1):77
He Y, Li X, Ben H, Xue X, Yang B (2017) Lipid production from dilute alkali corn stover lignin by Rhodococcus strains. ACS Sustain Chem Eng 5(3):2302–2311
Korntner P, Sumerskii I, Bacher M, Rosenau T, Potthast A (2015) Characterization of technical lignins by NMR spectroscopy: optimization of functional group analysis by 31P NMR spectroscopy. Holzforschung:807. https://doi.org/10.1515/hf-2014-0281
Ben H, Ragauskas AJ (2011) NMR characterization of pyrolysis oils from Kraft lignin. Energy Fuel 25(5):2322–2332
Pu Y, Cao S, Ragauska AJ (2011) Application of quantitative 31P NMR in biomass lignin and biofuel precursors characterization. Energy Environ Sci 4(9):3154–3166
Sannigrahi P, Ragauskas AJ (2011) Characterization of fermentation residues from the production of bio-ethanol from lignocellulosic feedstocks. J Biobased Mater Bioenergy 5(4):514–519
Kubo S, Kadla JF (2005) Hydrogen bonding in lignin: a Fourier transform infrared model compound study. Biomacromolecules 6(5):2815–2821
Meng X, Sun Q, Kosa M, Huang F, Pu Y, Ragauskas AJ (2016) Physicochemical structural changes of poplar and switchgrass during biomass pretreatment and enzymatic hydrolysis. ACS Sustain Chem Eng 4(9):4563–4572
Tolbert A, Akinosho H, Khunsupat R, Naskar AK, Ragauskas AJ (2014) Characterization and analysis of the molecular weight of lignin for biorefining studies. Biofuels Bioprod Biorefin 8(6):836–856
Le RK, Das P, Mahan KM, Anderson SA, Wells T Jr, Yuan JS, Ragauskas AJ (2017) Utilization of simultaneous saccharification and fermentation residues as feedstock for lipid accumulation in Rhodococcus opacus. AMB Express 7(1):185
Acknowledgments
This work was supported by US Department of Energy (award #DE—EE0006112), and we would like to acknowledge our collaborator Joshua S. Yuan at Texas A&M University.
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Le, R.K., Mahan, K.M., Ragauskas, A.J. (2019). Rhodococcus and Yarrowia-Based Lipid Production Using Lignin-Containing Industrial Residues. In: Balan, V. (eds) Microbial Lipid Production. Methods in Molecular Biology, vol 1995. Humana, New York, NY. https://doi.org/10.1007/978-1-4939-9484-7_5
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DOI: https://doi.org/10.1007/978-1-4939-9484-7_5
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