Abstract
Extracellular vesicles (EVs) are released by cells and can be found in cell culture supernatants and biofluids. EVs carry proteins, nucleic acids, and other cellular components and can deliver these to nearby or distant cells, making EVs of interest as both disease biomarkers and therapeutic targets. EVs in biofluids are heterogeneous, coming from different cell types and from different sources with the cell, which limits the usefulness of bulk EV analysis methods that report the average features of all EVs present. Single-particle measurements such as flow cytometry would be preferred, but the small size and low abundance of surface antigens challenges conventional flow cytometry approaches, leading to the development of vesicle-specific assays and experimental design. Among the key issues that have emerged are: (a) judicious choice of detection (triggering) approach; (b) appropriate control experiments to confirm the vesicular nature of the detected events and the contribution of coincidence (aka swarm detection); and (c) the importance of fluorescence calibration to allow data to be compared over time and between laboratories. We illustrate these issues in the context of fluorescence-triggered Vesicle Flow Cytometry (VFC), a general approach to the quantitative measurement of EV number, size, and surface marker expression.
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References
Colombo M, Raposo G, Théry C (2014) Biogenesis, secretion, and intercellular interactions of Exosomes and other extracellular vesicles. Annu Rev Cell Dev Biol 30(1)
Zaborowski MP, Balaj L, Breakefield XO, Lai CP (2015) Extracellular vesicles: composition, biological relevance, and methods of study. Bioscience 65(8):783–797. doi:10.1093/biosci/biv084
Nolan JP (2015) Flow Cytometry of extracellular vesicles: potential, pitfalls, and prospects. Curr Protoc Cytom 73:13.14.11–13.14.16. doi:10.1002/0471142956.cy1314s73
van der Pol E, Coumans FAW, Grootemaat AE, Gardiner C, Sargent IL, Harrison P, Sturk A, van Leeuwen TG, Nieuwland R (2014) Particle size distribution of exosomes and microvesicles determined by transmission electron microscopy, flow cytometry, nanoparticle tracking analysis, and resistive pulse sensing. J Thromb Haemost 12(7):1182–1192. doi:10.1111/jth.12602
Lacroix R, Judicone C, Mooberry M, Boucekine M, Key NS, Dignat-George F, the ISSCW (2013) Standardization of pre-analytical variables in plasma microparticle determination: results of the international society on thrombosis and Haemostasis SSC collaborative workshop. J Thromb Haemost 11(6):1190–1193. doi:10.1111/jth.12207
Lacroix R, Judicone C, Poncelet P, Robert S, Arnaud L, Sampol J, Dignat-george F (2012) Impact of pre-analytical parameters on the measurement of circulating microparticles: towards standardization of protocol. J Thromb Haemost 10(3):437–446
Lacroix R, Robert S, Poncelet P, Kasthuri R, Key N, Dignat-George F (2010) Standardization of platelet-derived microparticle enumeration by flow cytometry with calibrated beads: results of the international society on thrombosis and Haemostasis SSC collaborative workshop. J Thromb Haemost 8(11):2571–2574
Lötvall J, Hill AF, Hochberg F, Buzás EI, Di Vizio D, Gardiner C, Gho YS, Kurochkin IV, Mathivanan S, Quesenberry P, Sahoo S, Tahara H, Wauben MH, Witwer KW, Théry C (2014) Minimal experimental requirements for definition of extracellular vesicles and their functions: a position statement from the International Society for Extracellular Vesicles. J Extracell Vesicles 3(1.) 3:10.3402/jev.v3403.26913). doi:10.3402/jev.v3.26913
Witwer KW, Buzás EI, Bemis LT, Bora A, Lässer C, Lötvall J, Nolte-‘t Hoen EN, Piper MG, Sivaraman S, Skog J, Théry C, Wauben MH, Hochberg F (2013) Standardization of sample collection, isolation and analysis methods in extracellular vesicle research. J Extracell Vesicles, 2. 10.3402/jev.v3402i3400.20360. doi:10.3402/jev.v2i0.20360
Böing AN, van der Pol E, Grootemaat AE, Coumans FA, Sturk A, Nieuwland R (2014) Single-step isolation of extracellular vesicles by size-exclusion chromatography. J Extracell Vesicles 3:23430
Théry C, Amigorena S, Raposo G, Clayton A (2006) Isolation and characterization of exosomes from cell culture supernatants and biological fluids. Current Protocols Cell Biol Unit 3.22. 21-23.22. 29
Linares R, Tan S, Gounou C, Arraud N, Brisson AR (2015) High-speed centrifugation induces aggregation of extracellular vesicles. J Extracell Vesicles 4:29509
Chandler W, Yeung W, Tait J (2011) A new microparticle size calibration standard for use in measuring smaller microparticles using a new flow cytometer. J Thromb Haemost 9(6):1216–1224
van der Pol E, Coumans FAW, Sturk A, Nieuwland R, van Leeuwen TG (2014) Refractive index determination of nanoparticles in suspension using nanoparticle tracking analysis. Nano Lett 14(11):6195–6201. doi:10.1021/nl503371p
Robert S, Poncelet P, Lacroix R, Arnaud L, Giraudo L, Hauchard A, Sampol J, Dignat-george F (2009) Standardization of platelet-derived microparticle counting using calibrated beads and a Cytomics FC500 routine flow cytometer: a first step towards multicenter studies? J Thromb Haemost 7(1):190–197
Cointe S, Judicone C, Robert S, Mooberry M, Poncelet P, Wauben M, Nieuwland R, Key N, Dignat-George F, Lacroix R (2016) Standardization of microparticle enumeration across different flow cytometry platforms: results of a multicenter collaborative workshop. J Thromb Haemost 15(1):187–193
Arraud N, Gounou C, Turpin D, Brisson AR (2016) Fluorescence triggering: a general strategy for enumerating and phenotyping extracellular vesicles by flow cytometry. Cytometry A 89(2):184–195. doi:10.1002/cyto.a.22669
Kormelink TG, Arkesteijn GJA, Nauwelaers FA, van den Engh G, Nolte-'t Hoen ENM, Wauben MHM (2016) Prerequisites for the analysis and sorting of extracellular vesicle subpopulations by high-resolution flow cytometry. Cytometry A 89(2):135–147. doi:10.1002/cyto.a.22644
Stoner SA, Duggan E, Condello D, Guerrero A, Turk JR, Narayanan PK, Nolan JP (2016) High sensitivity flow cytometry of membrane vesicles. Cytometry A 89(2):196–206. doi:10.1002/cyto.a.22787
van der Vlist EJ, Nolte EN, Stoorvogel W, Arkesteijn GJ, Wauben MH (2012) Fluorescent labeling of nano-sized vesicles released by cells and subsequent quantitative and qualitative analysis by high-resolution flow cytometry. Nat Protoc 7(7):1311–1326
Akers JC, Ramakrishnan V, Nolan JP, Duggan E, Fu C-C, Hochberg FH, Chen CC, Carter BS (2016) Comparative analysis of technologies for quantifying extracellular vesicles (EVs) in clinical cerebrospinal fluids (CSF). PLoS One 11(2):e0149866
Brooks MB, Turk JR, Guerrero A, Narayanan PK, Nolan JP, Besteman EG, Wilson DW, Thomas RA, Fishman CE, Thompson KL, Eliinger-Ziegelbauer H, Pierson JB, Paulman A, Chiang AY, Schultze AE (2016) Non-lethal endotoxin injection: a rat model for new biomarkers of hypercoagulability. PLoS One 12(1):e0169976
Van Der Pol E, Hoekstra A, Sturk A, Otto C, Van Leeuwen T, Nieuwland R (2010) Optical and non-optical methods for detection and characterization of microparticles and exosomes. J Thromb Haemost 8(12):2596–2607
Wang L, Gaigalas AK, Abbasi F, Marti GE, Vogt RF, Schwartz A (2002) Quantitating fluorescence intensity from fluorophores: practical use of MESF values. J Res-Natl Inst Stand Technol 107(4):339–354
Hoffman RA, Wang L, Bigos M, Nolan JP (2012) NIST/ISAC standardization study: variability in assignment of intensity values to fluorescence standard beads and in cross calibration of standard beads to hard dyed beads. Cytometry A 81(9):785–796
Wang L, Gaigalas AK, Marti G, Abbasi F, Hoffman RA (2008) Toward quantitative fluorescence measurements with multicolor flow cytometry. Cytometry A 73(4):279–288
Nolan JP, Chambers JD, Sklar LA (1998) Cytometric approaches to the study of receptors. Phagocyte function: a guide for research and clinical evaluation. Wiley-Liss, New York, pp 19–45
Woods TA, Graves SW, Nolan JP (2005) Microsphere Surface Protein Determination Using Flow Cytometry. Current Protocols in Cytometry: Unit13.12. 11-13.12. 13
Coumans FAW, van der Pol E, Böing AN, Hajji N, Sturk G, van Leeuwen TG, Nieuwland R (2014) Reproducible extracellular vesicle size and concentration determination with tunable resistive pulse sensing. J Extracell Vesicles 3:25922
Valkonen S, van der Pol E, Böing A, Yuana Y, Yliperttula M, Nieuwland R, Laitinen S, Siljander P (2017) Biological reference materials for extracellular vesicle studies. Eur J Pharm Sci 98:4–16
Lee JA, Spidlen J, Boyce K, Cai J, Crosbie N, Dalphin M, Furlong J, Gasparetto M, Goldberg M, Goralczyk EM (2008) MIFlowCyt: the minimum information about a flow cytometry experiment. Cytometry A 73(10):926–930
Van Deun J, Mestdagh P, Agostinis P, Akay Ö, Anand S, Anckaert J, Martinez ZA, Baetens T, Beghein E, Bertier L (2017) EV-TRACK: transparent reporting and centralizing knowledge in extracellular vesicle research. Nat Methods 14(3):228–232
Acknowledgments
Supported by: UH2TR000931 from the NIH Common Fund, through the Office of Strategic Coordination/Office of the NIH Director.
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Nolan, J.P., Duggan, E. (2018). Analysis of Individual Extracellular Vesicles by Flow Cytometry. In: Hawley, T., Hawley, R. (eds) Flow Cytometry Protocols. Methods in Molecular Biology, vol 1678. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-7346-0_5
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DOI: https://doi.org/10.1007/978-1-4939-7346-0_5
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