Skip to main content

2D Projection Analysis of GPCR Complexes by Negative Stain Electron Microscopy

  • Protocol
G Protein-Coupled Receptors in Drug Discovery

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1335))

Abstract

While electron cryo-microscopy (cryo-EM) of biological specimens is the preferred single particle EM method for structure determination, its application is very challenging for the typically small (<150 kDa) complexes between GPCRs and their partner proteins. Negative stain EM, whereby the biological samples are embedded in a thin layer of heavy metal solution, is a well-established alternative technique that provides the enhanced contrast needed to visualize small macromolecular complexes. This methodology can offer a simple and powerful tool for the rapid evaluation of sample characteristics, such as homogeneity or oligomeric state. When coupled to single particle classification and averaging, negative stain EM can provide valuable information on the overall architecture and dynamics of protein complexes. Here we provide a concise protocol for negative stain imaging and two-dimensional (2D) projection analysis of GPCR complexes, including notes for the intricacies of the application in these biological systems.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 139.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

References

  1. Henderson R (2013) Structural biology: Ion channel seen by electron microscopy. Nature 504(7478):93–94. doi:10.1038/504093a

    Article  CAS  PubMed  Google Scholar 

  2. Kuhlbrandt W (2014) Biochemistry. The resolution revolution. Science 343(6178):1443–1444. doi:10.1126/science.1251652

    Article  PubMed  Google Scholar 

  3. Kuhlbrandt W (2014) Cryo-EM enters a new era. eLife 3:e03678. doi:10.7554/eLife.03678

    PubMed Central  PubMed  Google Scholar 

  4. Brenner S, Horne RW (1959) A negative staining method for high resolution electron microscopy of viruses. Biochim Biophys Acta 34:103–110

    Article  CAS  PubMed  Google Scholar 

  5. Westfield GH, Rasmussen SG, Su M, Dutta S, DeVree BT, Chung KY, Calinski D, Velez-Ruiz G, Oleskie AN, Pardon E, Chae PS, Liu T, Li S, Woods VL Jr, Steyaert J, Kobilka BK, Sunahara RK, Skiniotis G (2011) Structural flexibility of the G alpha s alpha-helical domain in the beta2-adrenoceptor Gs complex. Proc Natl Acad Sci U S A 108(38):16086–16091. doi:10.1073/pnas.1113645108

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  6. Shukla AK, Westfield GH, Xiao K, Reis RI, Huang LY, Tripathi-Shukla P, Qian J, Li S, Blanc A, Oleskie AN, Dosey AM, Su M, Liang CR, Gu LL, Shan JM, Chen X, Hanna R, Choi M, Yao XJ, Klink BU, Kahsai AW, Sidhu SS, Koide S, Penczek PA, Kossiakoff AA, Woods VL Jr, Kobilka BK, Skiniotis G, Lefkowitz RJ (2014) Visualization of arrestin recruitment by a G-protein-coupled receptor. Nature 512(7513):218–222. doi:10.1038/nature13430

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  7. Rasmussen SG, DeVree BT, Zou Y, Kruse AC, Chung KY, Kobilka TS, Thian FS, Chae PS, Pardon E, Calinski D, Mathiesen JM, Shah ST, Lyons JA, Caffrey M, Gellman SH, Steyaert J, Skiniotis G, Weis WI, Sunahara RK, Kobilka BK (2011) Crystal structure of the beta2 adrenergic receptor-Gs protein complex. Nature 477(7366):549–555. doi:10.1038/nature10361

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  8. Ohi M, Li Y, Cheng Y, Walz T (2004) Negative staining and image classification—powerful tools in modern electron microscopy. Biol Proced Online 6:23–34. doi:10.1251/bpo70

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  9. Zhao FQ, Craig R (2003) Capturing time-resolved changes in molecular structure by negative staining. J Struct Biol 141(1):43–52

    Article  CAS  PubMed  Google Scholar 

  10. Booth DS, Avila-Sakar A, Cheng Y (2011) Visualizing proteins and macromolecular complexes by negative stain EM: from grid preparation to image acquisition. J Vis Exp (58). doi:10.3791/3227

  11. Yang Z, Fang J, Chittuluru J, Asturias FJ, Penczek PA (2012) Iterative stable alignment and clustering of 2D transmission electron microscope images. Structure 20(2):237–247. doi:10.1016/j.str.2011.12.007

    Article  CAS  PubMed Central  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Georgios Skiniotis .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2015 Springer Science+Business Media New York

About this protocol

Cite this protocol

Peisley, A., Skiniotis, G. (2015). 2D Projection Analysis of GPCR Complexes by Negative Stain Electron Microscopy. In: Filizola, M. (eds) G Protein-Coupled Receptors in Drug Discovery. Methods in Molecular Biology, vol 1335. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-2914-6_3

Download citation

  • DOI: https://doi.org/10.1007/978-1-4939-2914-6_3

  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-2913-9

  • Online ISBN: 978-1-4939-2914-6

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics