Abstract
A growing body of preclinical evidence has led to the hypothesis that human Toll-like receptor 8 (hTLR8) activation in the tumor microenvironment (TME) could have potent anticancer effects through its action on monocytes, myeloid dendritic cells (mDCs), and natural killer (NK) cells. This has motivated the initiation of several clinical trials for chemical hTLR8 agonists in a variety of cancers. Concurrently, a growing number of synthetic antisense oligonucleotides (ASOs) are being developed as cancer therapeutics. We have recently reported that 2′-O-methyl (2′OMe)-modified ASOs can potentiate sensing of hTLR8 chemical agonists in a sequence-dependent manner. This suggests that select gene-targeting ASOs with anticancer activity may synergize with low-dose hTLR8 agonists in the TME. Here, we provide a detailed protocol to rapidly screen and identify such synthetic bifunctional oligonucleotides with synergistic activity on hTLR8 sensing.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Vickers TA, Koo S, Bennett CF et al (2003) Efficient reduction of target RNAs by small interfering RNA and RNase H-dependent antisense agents. A comparative analysis. J Biol Chem 278:7108–7118
Wu H, Lima WF, Crooke ST (1999) Properties of cloned and expressed human RNase H1. J Biol Chem 274:28270–28278
Crooke ST, Liang XH, Baker BF et al (2021) Antisense technology: a review. J Biol Chem 296:100416
Terada C, Kawamoto S, Yamayoshi A et al (2022) Chemistry of therapeutic oligonucleotides that drives interactions with biomolecules. Pharmaceutics 14:2647
Eckstein F (2014) Phosphorothioates, essential components of therapeutic oligonucleotides. Nucleic Acid Ther 24:374–387
Crooke ST, Wang S, Vickers TA et al (2017) Cellular uptake and trafficking of antisense oligonucleotides. Nat Biotechnol 35:230–237
Liang XH, Sun H, Shen W et al (2015) Identification and characterization of intracellular proteins that bind oligonucleotides with phosphorothioate linkages. Nucleic Acids Res 43:2927–2945
Shen W, De Hoyos CL, Migawa MT et al (2019) Chemical modification of PS-ASO therapeutics reduces cellular protein-binding and improves the therapeutic index. Nat Biotechnol 37:640–650
Migawa MT, Shen W, Wan WB et al (2019) Site-specific replacement of phosphorothioate with alkyl phosphonate linkages enhances the therapeutic profile of gapmer ASOs by modulating interactions with cellular proteins. Nucleic Acids Res 47:5465–5479
Karikó K, Buckstein M, Ni H et al (2005) Suppression of RNA recognition by Toll-like receptors: the impact of nucleoside modification and the evolutionary origin of RNA. Immunity 23:165–175
Judge AD, Sood V, Shaw JR et al (2005) Sequence-dependent stimulation of the mammalian innate immune response by synthetic siRNA. Nat Biotechnol 23:457–462
Judge AD, Bola G, Lee AC et al (2006) Design of noninflammatory synthetic siRNA mediating potent gene silencing in vivo. Mol Ther 13:494–505
Zhu Y, Zhu L, Wang X et al (2022) RNA-based therapeutics: an overview and prospectus. Cell Death Dis 13:644
Alharbi AS, Garcin AJ, Lennox KA et al (2020) Rational design of antisense oligonucleotides modulating the activity of TLR7/8 agonists. Nucleic Acids Res 48:7052–7065
Valentin R, Wong C, Alharbi AS et al (2021) Sequence-dependent inhibition of cGAS and TLR9 DNA sensing by 2′-O-methyl gapmer oligonucleotides. Nucleic Acids Res 49:6082–6099
Lind NA, Rael VE, Pestal K et al (2022) Regulation of the nucleic acid-sensing Toll-like receptors. Nat Rev Immunol 22:224–235
Tanji H, Ohto U, Shibata T et al (2013) Structural reorganization of the Toll-like receptor 8 dimer induced by agonistic ligands. Science 339:1426–1429
Ostendorf T, Zillinger T, Andryka K et al (2020) Immune sensing of synthetic, bacterial, and protozoan RNA by Toll-like receptor 8 requires coordinated processing by RNase T2 and RNase 2. Immunity 52:591–605.e596
Greulich W, Wagner M, Gaidt MM et al (2019) TLR8 is a sensor of RNase T2 degradation products. Cell 179:1264–1275.e1213
Tanji H, Ohto U, Shibata T et al (2015) Toll-like receptor 8 senses degradation products of single-stranded RNA. Nat Struct Mol Biol 22:109–115
Shibata T, Ohto U, Nomura S et al (2016) Guanosine and its modified derivatives are endogenous ligands for TLR7. Int Immunol 28:211–222
Jurk M, Kritzler A, Schulte B et al (2006) Modulating responsiveness of human TLR7 and 8 to small molecule ligands with T-rich phosphorothiate oligodeoxynucleotides. Eur J Immunol 36:1815–1826
Gorden KK, Qiu X, Battiste JJ et al (2006) Oligodeoxynucleotides differentially modulate activation of TLR7 and TLR8 by imidazoquinolines. J Immunol 177:8164–8170
He M, Soni B, Schwalie PC et al (2022) Combinations of Toll-like receptor 8 agonist TL8-506 activate human tumor-derived dendritic cells. J Immunother Cancer 10:e004268
McWhirter SM, Jefferies CA (2020) Nucleic acid sensors as therapeutic targets for human disease. Immunity 53:78–97
Sun H, Li Y, Zhang P et al (2022) Targeting Toll-like receptor 7/8 for immunotherapy: recent advances and prospectives. Biomark Res 10:89
Baird JR, Monjazeb AM, Shah O et al (2017) Stimulating innate immunity to enhance radiation therapy-induced tumor control. Int J Radiat Oncol Biol Phys 99:362–373
Hornung V, Rothenfusser S, Britsch S et al (2002) Quantitative expression of Toll-like receptor 1-10 mRNA in cellular subsets of human peripheral blood mononuclear cells and sensitivity to CpG oligodeoxynucleotides. J Immunol 168:4531–4537
Lu H, Dietsch GN, Matthews MA et al (2012) VTX-2337 is a novel TLR8 agonist that activates NK cells and augments ADCC. Clin Cancer Res 18:499–509
Dang Y, Rutnam ZJ, Dietsch G et al (2018) TLR8 ligation induces apoptosis of monocytic myeloid-derived suppressor cells. J Leukoc Biol 103:157–164
Quemener AM, Bachelot L, Forestier A et al (2020) The powerful world of antisense oligonucleotides: from bench to bedside. Wiley Interdiscip Rev RNA 11:e1594
Lorentzen CL, Haanen JB, Met Ö et al (2022) Clinical advances and ongoing trials on mRNA vaccines for cancer treatment. Lancet Oncol 23:e450–e458
Burris HA, Patel MR, Cho DC et al (2019) A phase 1, open-label, multicenter study to assess the safety, tolerability, and immunogenicity of mRNA-4157 alone in subjects with resected solid tumors and in combination with pembrolizumab in subjects with unresectable solid tumors (Keynote-603). JCO Glob Oncol 5:93
Kranz LM, Diken M, Haas H et al (2016) Systemic RNA delivery to dendritic cells exploits antiviral defence for cancer immunotherapy. Nature 534:396–401
Acknowledgements
We thank M. Speir for editorial assistance. This work was supported by funding from the Australian National Health and Medical Research Council (2020565 to MG) and the Victorian Government’s Operational Infrastructure Support Program.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2023 The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature
About this protocol
Cite this protocol
Sapkota, S., Gantier, M.P. (2023). Selecting Therapeutic Antisense Oligonucleotides with Gene Targeting and TLR8 Potentiating Bifunctionality. In: Jenkins, B.J. (eds) Inflammation and Cancer. Methods in Molecular Biology, vol 2691. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-3331-1_17
Download citation
DOI: https://doi.org/10.1007/978-1-0716-3331-1_17
Published:
Publisher Name: Humana, New York, NY
Print ISBN: 978-1-0716-3330-4
Online ISBN: 978-1-0716-3331-1
eBook Packages: Springer Protocols