Abstract
Protein refolding is a crucial procedure in bacterial recombinant expression. Aggregation and misfolding are the two challenges that can affect the overall yield and specific activity of the folded proteins. We demonstrated the in vitro use of nanoscale “thermostable exoshells” (tES) to encapsulate, fold and release diverse protein substrates. With tES, the soluble yield, functional yield, and specific activity increased from 2-fold to >100-fold when compared to folding in its absence. On average, the soluble yield was determined to be 6.5 mg/100 mg of tES for a set of 12 diverse substrates evaluated. The electrostatic charge complementation between the tES interior and the protein substrate was considered as the primary determinant for functional folding. We thus describe a useful and simple method for in vitro folding that has been evaluated and implemented in our laboratory.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Singh A, Upadhyay V, Upadhyay AK, Singh SM, Panda AK (2015) Protein recovery from inclusion bodies of Escherichia coli using mild solubilization process. Microb Cell Factories 14:1–10
Ramón A, Señorale M, Marín M (2014) Inclusion bodies: not that bad… . Front Microbiol 5:56
Yamaguchi H, Miyazaki M (2014) Refolding techniques for recovering biologically active recombinant proteins from inclusion bodies. Biomolecules 4:235–251
Alibolandi M, Mirzahoseini H (2011) Chemical assistance in refolding of bacterial inclusion bodies. Biochem Res Int 2011:631607
Humer D, Spadiut O (2018) Wanted: more monitoring and control during inclusion body processing. World J Microbiol Biotechnol 34:1–9
Eiberle MK, Jungbauer A (2010) Technical refolding of proteins: do we have freedom to operate? Biotechnol J 5:547–559
Hartl FU, Hayer-Hartl M (2009) Converging concepts of protein folding in vitro and in vivo. Nat Struct Mol Biol 16:574–581
Jhamb K, Jawed A, Sahoo DK (2008) Immobilized chaperones: a productive alternative to refolding of bacterial inclusion body proteins. Process Biochem 43:587–597
Ma FH, Li C, Liu Y, Shi L (2020) Mimicking molecular chaperones to regulate protein folding. Adv Mater 32:1805945
Mizutani H, Sugawara H, Buckle AM, Sangawa T, Miyazono K-i, Ohtsuka J, Nagata K, Shojima T, Nosaki S, Xu Y (2018) REFOLDdb: a new and sustainable gateway to experimental protocols for protein refolding. BMC Struct Biol 17:1–8
Deshpande S, Masurkar ND, Girish VM, Desai M, Chakraborty G, Chan JM, Drum CL (2017) Thermostable exoshells fold and stabilize recombinant proteins. Nat Commun 8:1–8
Sadeghi S, Deshpande S, Girish VM, Aksoyoglu A, Bafna J, Winterhalter M, Kini RM, Lane DP, Drum CL (2021) A general approach to protein folding using thermostable exoshells. Nat Commun 12:1–15
Girish VM, Sadeghi S, Vaidya SS, Kong SN, Drum CL (2021) Nanoencapsulation as a general solution for lyophilization of labile substrates. Pharmaceutics 13:1790
Sadeghi S, Masurkar ND, Girish VM, Deshpande S, Kok Yong Tan W, Yee S, Kang S-A, Lim Y-P, Kai Hua Chow E, Drum CL (2022) Bioorthogonal catalysis for treatment of solid tumors using thermostable, self-assembling, single enzyme nanoparticles and natural product conversion with indole-3-acetic acid. ACS Nano 16:10292–10301
Sadeghi S, Vallerinteavide Mavelli G, Vaidya SS, Drum CL (2022) Gastrointestinal tract stabilized protein delivery using disulfide thermostable exoshell system. Int J Mol Sci 23:9856
Voss NR, Gerstein M (2010) 3V: cavity, channel and cleft volume calculator and extractor. Nucleic Acids Res 38(suppl_2):W555–W562
Pulsipher KW, Bulos JA, Villegas JA, Saven JG, Dmochowski IJ (2018) A protein–protein host–guest complex: thermostable ferritin encapsulating positively supercharged green fluorescent protein. Protein Sci 27:1755–1766
Chakraborti S, Lin T-Y, Glatt S, Heddle JG (2020) Enzyme encapsulation by protein cages. RSC Adv 10:13293–13301
Palmer I, Wingfield PT (2012) Preparation and extraction of insoluble (inclusion-body) proteins from Escherichia coli. Current Protoc Protein Sci 70:6.3. 1–6.3. 20
Sun S, Zhou J-Y, Yang W, Zhang H (2014) Inhibition of protein carbamylation in urea solution using ammonium-containing buffers. Anal Biochem 446:76–81
Wingfield PT (1995) Use of protein folding reagents. Curr Protoc Protein Sci (1):A. 3A. 1–A. 3A. 4
Bornhorst JA, Falke JJ (2000) [16] Purification of proteins using polyhistidine affinity tags. Methods Enzymol 326:245–254
Acknowledgments
This research was funded by NMRC-Clinician Scientist Award, CSAINV17nov012, and A*STAR-AME, A2083c0055. We thank Kong Shik Nie and Siddhesh Sujit Vaidya for their recent contributions to the study.
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2023 The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature
About this protocol
Cite this protocol
Vallerinteavide Mavelli, G., Sadeghi, S., Drum, C.L. (2023). Laboratory Scale Production of Complex Proteins Using Charge Complimentary Nanoenvironments. In: Ueno, T., Lim, S., Xia, K. (eds) Protein Cages. Methods in Molecular Biology, vol 2671. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-3222-2_23
Download citation
DOI: https://doi.org/10.1007/978-1-0716-3222-2_23
Published:
Publisher Name: Humana, New York, NY
Print ISBN: 978-1-0716-3221-5
Online ISBN: 978-1-0716-3222-2
eBook Packages: Springer Protocols