Skip to main content

Methods for Characterizing Flavobacterium in Fish

  • Protocol
  • First Online:
Aquaculture Microbiology

Part of the book series: Springer Protocols Handbooks ((SPH))

  • 304 Accesses

Abstract

Bacterial gill disease, rainbow trout fry syndrome, Columnaris disease, and bacterial cold-water disease are caused by bacteria that are pathogenic to fish. They belong to the Flavobacteriaceae family. They are spotted with yellow pigmentation in aquatic organisms. These kinds of bacteria are isolated and identified using techniques such as Gram staining, motility, gliding motility, biochemical tests, and API 20E. It can also be identified using technical methods by plate count and microscopy. Molecular characterization such as DNA extraction, polymerase chain reaction (PCR), and phylogenetic analysis is also done to identify the species.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 149.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 129.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 199.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. De Aquicultura C (2008) Isolation and characterization of Flavobacterium columnare (Bernardet et al. 2002) from four tropical fish species in Brazil. Braz J Biol 68(2):409–414

    Article  Google Scholar 

  2. P. Team (2016) Isolation and characterisation of flavobacteria from wild and cultured freshwater fish species in hungary. Acta Vet Hung 64(1):13–25. https://doi.org/10.1556/004.2016.002

    Article  CAS  Google Scholar 

  3. Declercq AM, Haesebrouck F, Van Den Broeck W, Bossier P, Decostere A (2013) Columnaris disease in fish: a review with emphasis on bacterium-host interactions. Vet Res 44:1–17

    Article  Google Scholar 

  4. Starliper CE (2011) Bacterial Coldwater disease of fishes caused by Flavobacterium psychrophilum. J Adv Res 2(2):97–108. https://doi.org/10.1016/j.jare.2010.04.001

    Article  Google Scholar 

  5. Good C, Davidson J, Wiens GD, Welch TJ, Summerfelt S (2015) Short Communication Flavobacterium branchiophilum and F. succinicans associated with bacterial gill disease in rainbow trout Oncorhynchus mykiss (Walbaum) in water recirculation aquaculture systems. J Fish Dis 2011:409–413. https://doi.org/10.1111/jfd.12249

    Article  Google Scholar 

  6. Loch TP, Faisal M (2019) Emerging flavobacterial infections in fish: a review. J Adv Res 6(3):283–300. https://doi.org/10.1016/j.jare.2014.10.009

    Article  CAS  Google Scholar 

  7. Sung JY et al (2018) Utility of conventional culture and MALDI-TOF MS for identification of microbial communities in bronchoalveolar lavage fluid in comparison with the GS junior next generation sequencing system. Ann Lab Med 38(2):110–118

    Article  CAS  PubMed  Google Scholar 

  8. Decostere A, Haesebrouck F, Devriese LA (1997) Shieh medium supplemented with tobramycin for selective isolation of Flavobacterium columnare (Flexibacter columnaris) from diseased fish. J Clin Microbiol 35(1):322–324. https://doi.org/10.1128/jcm.35.1.322-324.1997

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  9. Altun S, Diler Ö, Ekici S (2008) Isolation of Flavobacterium columnare from cultured rainbow trout (Oncorhynchus mykiss) fry in Turkey. Turkish J Fish Aquat Sci 169:165–169

    Google Scholar 

  10. Buller NB (2014) Bacteria and fungi from fish and other aquatic animals: a practical identification manual. CABI, Wallingford, Oxfordshire

    Google Scholar 

  11. Tien NT, Dung TT, Tuan NA, Crumlish M (2012) First identification of Flavobacterium columnare infection in farmed freshwater striped catfish Pangasianodon hypophthalmus. Dis Aquat Organ 100:83–88. https://doi.org/10.3354/dao02478

    Article  CAS  PubMed  Google Scholar 

  12. Becerra SC, Roy DC, Sanchez CJ, Christy RJ, Burmeister DM (2016) An optimized staining technique for the detection of Gram positive and Gram-negative bacteria within tissue. BMC Res Notes 9(1):1–10. https://doi.org/10.1186/s13104-016-1902-0

    Article  CAS  Google Scholar 

  13. Al-Dhabaan FA (2019) Morphological, biochemical and molecular identification of petroleum hydrocarbons biodegradation bacteria isolated from oil polluted soil in Dhahran, Saud Arabia. Saudi J Biol Sci 26(6):1247–1252. https://doi.org/10.1016/j.sjbs.2018.05.029

    Article  CAS  PubMed  Google Scholar 

  14. Andreou LV (2013) Preparation of genomic DNA from bacteria. Methods Enzymol 529:143–151. https://doi.org/10.1016/B978-0-12-418687-3.00011-2

    Article  CAS  PubMed  Google Scholar 

  15. Sebastião FA, Pilarski F, Lemos MVF (2010) Isolation and molecular characterization of Flavobacterium columnare strains from fish in Brazil. Adv J Microbiol Res 2(August):22–29

    Google Scholar 

Download references

Acknowledgments

The work is supported by the Ministry of Earth Sciences grant (MoES) (MoES/36/OOIS/53/2016), Govt. of India, and Sathyabama Institute of Science and Technology.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Ravi Mani .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2023 The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature

About this protocol

Check for updates. Verify currency and authenticity via CrossMark

Cite this protocol

Gopi, Y., Sai, S., Ganesan, M., Mani, R. (2023). Methods for Characterizing Flavobacterium in Fish. In: Thomas, J., Amaresan, N. (eds) Aquaculture Microbiology. Springer Protocols Handbooks. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-3032-7_3

Download citation

  • DOI: https://doi.org/10.1007/978-1-0716-3032-7_3

  • Published:

  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-3031-0

  • Online ISBN: 978-1-0716-3032-7

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics