Skip to main content

Isolation and Quality Control of Yeast Mitochondria

  • Protocol
  • First Online:
Mitochondrial DNA

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2615))

Abstract

The isolation of organelles devoid of other cellular compartments is crucial for studying organellar proteomes and the localization of newly identified proteins, as well as for assessing specific organellar functions. Here, we describe a protocol for the isolation of crude and highly pure mitochondria from Saccharomyces cerevisiae and provide methods for testing the functional integrity of the isolated organelles.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 189.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 169.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 249.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Hartwell LH (1974) Saccharomyces cerevisiae cell cycle. Bacteriol Rev 38:164–198

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  2. Tsukada M, Ohsumi Y (1993) Isolation and characterization of autophagy defective mutants of Saccharomyces cerevisiae. FEBS Lett 333:169–174

    Article  CAS  PubMed  Google Scholar 

  3. Nunnari J, Suomalainen A (2012) Mitochondria: in sickness and in health. Cell 148:1145–1159

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Rutter J, Hughes AL (2015) Power(2): the power of yeast genetics applied to the powerhouse of the cell. Trends Endocrinol Metab 26:59–68

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  5. Neupert W, Herrmann JM (2007) Translocation of proteins into mitochondria. Annu Rev Biochem 76:723–749

    Article  CAS  PubMed  Google Scholar 

  6. Shadel GS (1999) Yeast as a model for human mtDNA replication. Am J Hum Genet 65:1230–1237

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  7. Mick DU, Fox TD, Rehling P (2011) Inventory control: cytochrome c oxidase assembly regulates mitochondrial translation. Nat Rev Mol Cell Biol 12:14–20

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  8. Schägger H, Pfeiffer K (2000) Supercomplexes in the respiratory chains of yeast and mammalian mitochondria. EMBO J 19:1777–1783

    Article  PubMed  PubMed Central  Google Scholar 

  9. Lill R (2009) Function and biogenesis of iron-sulphur proteins. Nature 460:831–838

    Article  CAS  PubMed  Google Scholar 

  10. Schmidt O, Pfanner N, Meisinger C (2010) Mitochondrial protein import: from proteomics to functional mechanisms. Nat Rev Mol Cell Biol 11:655–667

    Article  CAS  PubMed  Google Scholar 

  11. Wiedemann N, Pfanner N (2017) Mitochondrial machineries for protein import and assembly. Annu Rev Biochem 86:685–714

    Article  CAS  PubMed  Google Scholar 

  12. Poveda-Huertes D, Mulica P, Vögtle FN (2017) The versatility of the mitochondrial presequence processing machinery: cleavage, quality control and turnover. Cell Tissue Res 367:73–81

    Article  CAS  PubMed  Google Scholar 

  13. Westermann B (2014) Mitochondrial inheritance in yeast. Biochim Biophys Acta 7:1039–1046

    Article  Google Scholar 

  14. Hoppins S, Lackner L, Nunnari J (2007) The machines that divide and fuse mitochondria. Annu Rev Biochem 76:751–780

    Article  CAS  PubMed  Google Scholar 

  15. Eisenberg T, Büttner S, Kroemer G et al (2007) The mitochondrial pathway in yeast apoptosis. Apoptosis 12:1011–1023

    Article  CAS  PubMed  Google Scholar 

  16. Sickmann A, Reinders J, Wagner Y et al (2003) The proteome of Saccharomyces cerevisiae mitochondria. Proc Natl Acad Sci U S A 100:13207–13212

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  17. Zahedi RP, Sickmann BAM et al (2006) Proteomic analysis of the yeast mitochondrial outer membrane reveals accumulation of a subclass of preproteins. Mol Biol Cell 17:1436–1450

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  18. Reinders J, Zahedi RP, Pfanner N et al (2006) Toward the complete yeast mitochondrial proteome: multidimensional separation techniques for mitochondrial proteomics. J Proteome Res 5:1543–1554

    Article  CAS  PubMed  Google Scholar 

  19. Vögtle FN, Wortelkamp S, Zahedi RP et al (2009) Global analysis of the mitochondrial N-Proteome identifies a processing peptidase critical for protein stability. Cell 139:428–439

    Article  PubMed  Google Scholar 

  20. Vögtle FN, Burkhart JM, Rao S et al (2012) Intermembrane space proteome of yeast mitochondria. Mol Cell Proteomics 11:1840–1852

    Article  PubMed  PubMed Central  Google Scholar 

  21. Vögtle FN, Burkhart JM, Gonczarowska-Jorge H et al (2017) Landscape of submitochondrial protein distribution. Nat Commun 8:290

    Article  PubMed  PubMed Central  Google Scholar 

  22. Schmidt O, Harbauer AB, Rao S et al (2011) Regulation of mitochondrial protein import by cytosolic kinases. Cell 144:227–239

    Article  CAS  PubMed  Google Scholar 

  23. Daum G, Böhni PC, Schatz G (1982) Import of proteins into mitochondria. Cytochrome b2 and cytochrome c peroxidase are located in the intermembrane space of yeast mitochondria. J Biol Chem 257:13028–13033

    Article  CAS  PubMed  Google Scholar 

  24. Hartl FU, Ostermann J, Guiard B et al (1987) Successive translocation into and out of the mitochondrial matrix: targeting of proteins to the intermembrane space by a bipartite signal peptide. Cell 51:1027–1037

    Article  CAS  PubMed  Google Scholar 

  25. Zinser E, Daum G (1995) Isolation and biochemical characterization of organelles from the yeast, Saccharomyces cerevisiae. Yeast 11:493–536

    Article  CAS  PubMed  Google Scholar 

  26. Glick BS, Pon LA (1995) Isolation of highly purified mitochondria from Saccharomyces cerevisiae. Methods Enzymol 260:213–223

    Article  CAS  PubMed  Google Scholar 

  27. Meisinger C, Sommer T, Pfanner N (2000) Purification of Saccharomyces cerevisiae mitochondria devoid of microsomal and cytosolic contaminations. Anal Biochem 287:339–342

    Article  CAS  PubMed  Google Scholar 

  28. Meisinger C, Pfanner N, Truscott KN (2006) Isolation of yeast mitochondria. Meth Mol Biol 313:33–39

    CAS  Google Scholar 

  29. Walter C, Gonczarowska-Jorge H, Sickmann A et al (2018) Advanced tools for the analysis of protein phosphorylation in yeast mitochondria. Anal Biochem 554:23–27

    Article  CAS  PubMed  Google Scholar 

  30. Stojanovski D, Pfanner N, Wiedemann N (2007) Import of proteins into mitochondria. Meth Cell Biol 80:783–806

    Article  CAS  Google Scholar 

Download references

Acknowledgments

Our work is supported by the Deutsche Forschungsgemeinschaft (DFG) under Germany’s Excellence Strategy (CIBSS – EXC-2189 – Project ID 390939984 to C.M., F.N.V. and A.A.T.), the RTG 2202/278002225 (to C.M.), RTG 2206/423813989 (to C.M. and F.N.V.), the SFB 1381 (Project-ID 403222702, to C.M. and F.N.V.), and the Emmy-Noether program (to F.N.V).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Chris Meisinger .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2023 The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature

About this protocol

Check for updates. Verify currency and authenticity via CrossMark

Cite this protocol

Taskin, A.A., Moretti, D.N., Vögtle, F.N., Meisinger, C. (2023). Isolation and Quality Control of Yeast Mitochondria. In: Nicholls, T.J., Uhler, J.P., Falkenberg, M. (eds) Mitochondrial DNA. Methods in Molecular Biology, vol 2615. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-2922-2_4

Download citation

  • DOI: https://doi.org/10.1007/978-1-0716-2922-2_4

  • Published:

  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-2921-5

  • Online ISBN: 978-1-0716-2922-2

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics