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Stable Isotope Probing-RNA Strategy to Study Plant/Fungus Interactions

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Microbial Environmental Genomics (MEG)

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2605))

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Abstract

The use of stable-isotope probing (SIP) allows tracing specific labeled substrates into fungi leading to a better understanding of their role in biogeochemical cycles and their relationship with their environment. Stable isotope probing combined with ribosomal RNA molecule, conserved in the three kingdoms of life, and messenger RNA analysis permits the linkage of diversity and function. Here, we describe two methods designed to investigate the interactions between plants and their associated mycorrhizal compartment by tracing carbon flux from the host plant to its symbionts.

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Correspondence to Philippe Vandenkoornhuyse .

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© 2023 The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature

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Van, A.L., Duhamel, M., Quaiser, A., Vandenkoornhuyse, P. (2023). Stable Isotope Probing-RNA Strategy to Study Plant/Fungus Interactions. In: Martin, F., Uroz, S. (eds) Microbial Environmental Genomics (MEG). Methods in Molecular Biology, vol 2605. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-2871-3_9

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  • DOI: https://doi.org/10.1007/978-1-0716-2871-3_9

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  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-2870-6

  • Online ISBN: 978-1-0716-2871-3

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