Abstract
Super-resolution microscopy methods enable the visualization of biological processes on the level of a few nanometers. However, the application of these techniques in biological systems is limited by the availability of small affinity reagents. Slow off-rate-modified aptamers as nucleic acid analogues to antibodies have been successfully applied to improve the resolution and quantification of DNA-PAINT. In this chapter, we describe a protocol for using SOMAmers as labeling reagents for super-resolution microscopy.
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References
Schlichthaerle T et al (2019) Direct visualization of single nuclear pore complex proteins using genetically-encoded probes for DNA-PAINT. Angew Chem Int Ed Engl 58:13004–13008
Jungmann R et al (2016) Quantitative super-resolution imaging with qPAINT. Nat Methods 13:439–442
Opazo F et al (2012) Aptamers as potential tools for super-resolution microscopy. Nat Methods 9:938–939
Gomes de Castro MA, Hobartner C, Opazo F (2017) Aptamers provide superior stainings of cellular receptors studied under super-resolution microscopy. PLoS One 12:e0173050
Gold L et al (2010) Aptamer-based multiplexed proteomic technology for biomarker discovery. PLoS One 5:e15004
Gupta S et al (2011) Rapid histochemistry using slow off-rate modified aptamers with anionic competition. Appl Immunohistochem Mol Morphol 19:273–278
Strauss S et al (2018) Modified aptamers enable quantitative sub-10-nm cellular DNA-PAINT imaging. Nat Methods 15:685–688
Rohloff JC et al (2014) Nucleic acid ligands with protein-like side chains: modified aptamers and their use as diagnostic and therapeutic agents. Mol Therapy Nucl Acids 3
Schnitzbauer J, Strauss MT, Schlichthaerle T, Schueder F, Jungmann R (2017) Super-resolution microscopy with DNA-PAINT. Nat Protoc 12:1198–1228
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Strauss, S., Jungmann, R. (2023). Slow-Off-Rate-Modified Aptamer Labeling for Fluorescence Microscopy and DNA-PAINT. In: Mayer, G., Menger, M.M. (eds) Nucleic Acid Aptamers. Methods in Molecular Biology, vol 2570. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-2695-5_13
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DOI: https://doi.org/10.1007/978-1-0716-2695-5_13
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Publisher Name: Humana, New York, NY
Print ISBN: 978-1-0716-2694-8
Online ISBN: 978-1-0716-2695-5
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