Skip to main content

Three-Dimensional Atlas of the Human Amygdala Subnuclei Constructed Using Immunohistochemical and Ultrahigh-Field Magnetic Resonance Imaging Data

  • Protocol
  • First Online:
Neuronal Cell Death

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2515))

Abstract

The amygdala is central for social and emotional processing and has been implicated in various disorders including autism spectrum disorder (ASD) and Alzheimer’s disease (AD). Animal research and some limited research with humans has indicated that widespread alterations in neuronal development or neuronal loss in the basolateral and other amygdala subnuclei may be a contributing factor to variations in social behaviours. Yet, the basolateral amygdala is comprised of three subnuclei, each with a specialized role related to the coordination of emotional regulation. Due to their small size, the nuclei which comprise the basolateral amygdala remain understudied in humans in vivo. In this work, we describe methodology to examine the basolateral amygdala and other subnuclei in human ex vivo medial temporal lobe prosections using ultrahigh-field magnetic resonance imaging (MRI) at 9.4 T. Manual segmentations of the amygdala subnuclei on MR images, verified with immunohistochemical data, provide a robust three-dimensional atlas of the human amygdala. The goal is to apply the atlas to in vivo MRI scans to examine basolateral amygdala macrostructural development attributed to social cognitive dysfunction in ASD and other neurodevelopmental disorders. Furthermore, the atlas can be used to examine MRI-based correlates of neuronal loss commonly seen in neurodegenerative disorders.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 129.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 169.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 249.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Alexander GE, DeLong MR, Strick PL (1986) Parallel organization of functionally segregated circuits linking basal ganglia and cortex. Annu Rev Neurosci 9:357–381. https://doi.org/10.1146/annurev.ne.09.030186.002041

    Article  CAS  PubMed  Google Scholar 

  2. Amaral DG (2003) The amygdala, social behavior, and danger detection. Ann N Y Acad Sci 1000:337–347. https://doi.org/10.1196/annals.1280.015

    Article  PubMed  Google Scholar 

  3. Atzil S, Touroutoglou A, Rudy T, Salcedo S, Feldman R, Hooker JM et al (2017) Dopamine in the medial amygdala network mediates human bonding. Proc Natl Acad Sci U S A 114(9):2361–2366. https://doi.org/10.1073/pnas.1612233114

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Morris JS, Dolan RJ (2001) Involvement of human amygdala and orbitofrontal cortex in hunger-enhanced memory for food stimuli. J Neurosci 21(14):5304–5310

    Article  CAS  Google Scholar 

  5. Newman SW (1999) The medial extended amygdala in male reproductive behavior. A node in the mammalian social behavior network. Ann N Y Acad Sci 877:242–257. https://doi.org/10.1111/j.1749-6632.1999.tb09271.x

    Article  CAS  PubMed  Google Scholar 

  6. Yoo SS, Gujar N, Hu P, Jolesz FA, Walker MP (2007) The human emotional brain without sleep--a prefrontal amygdala disconnect. Curr Biol 17(20):R877–R878. https://doi.org/10.1016/j.cub.2007.08.007

    Article  CAS  PubMed  Google Scholar 

  7. Markesbery WR (2010) Neuropathologic alterations in mild cognitive impairment: a review. J Alzheimers Dis 19(1):221–228. https://doi.org/10.3233/JAD-2010-1220

    Article  PubMed  PubMed Central  Google Scholar 

  8. Yilmazer-Hanke DM (1998) Alzheimer’s disease. The density of amygdalar neuritic plaques is associated with the severity of neurofibrillary pathology and the degree of beta-amyloid protein deposition in the cerebral cortex. Acta Anat (Basel) 162(1):46–55

    Article  CAS  Google Scholar 

  9. Ladd ME, Bachert P, Meyerspeer M, Moser E, Nagel AM, Norris DG et al (2018) Pros and cons of ultra-high-field MRI/MRS for human application. Prog Nucl Magn Reson Spectrosc 109:1–50. https://doi.org/10.1016/j.pnmrs.2018.06.001

    Article  CAS  PubMed  Google Scholar 

  10. Tyszka JM, Pauli WM (2016) In vivo delineation of subdivisions of the human amygdaloid complex in a high-resolution group template. Hum Brain Mapp 37(11):3979–3998. https://doi.org/10.1002/hbm.23289

    Article  PubMed  PubMed Central  Google Scholar 

  11. Saygin ZM, Kliemann D, Iglesias JE, van der Kouwe AJW, Boyd E, Reuter M et al (2017) High-resolution magnetic resonance imaging reveals nuclei of the human amygdala: manual segmentation to automatic atlas. NeuroImage 155:370–382. https://doi.org/10.1016/j.neuroimage.2017.04.046

    Article  CAS  PubMed  Google Scholar 

  12. Pollock E, Everest M, Brown A, Poulter MO (2014) Metalloproteinase inhibition prevents inhibitory synapse reorganization and seizure genesis. Neurobiol Dis 70:21–31. https://doi.org/10.1016/j.nbd.2014.06.003

    Article  CAS  PubMed  Google Scholar 

  13. Brady DR, Carey RG, Mufson EJ (1992) Reduced nicotinamide adenine dinucleotide phosphate-diaphorase (NADPH-d) profiles in the amygdala of human and New World monkey (Saimiri sciureus). Brain Res 577(2):236–248. https://doi.org/10.1016/0006-8993(92)90279-i

    Article  CAS  PubMed  Google Scholar 

  14. Sims KS, Williams RS (1990) The human amygdaloid complex: a cytologic and histochemical atlas using Nissl, myelin, acetylcholinesterase and nicotinamide adenine dinucleotide phosphate diaphorase staining. Neuroscience 36(2):449–472. https://doi.org/10.1016/0306-4522(90)90440-f

    Article  CAS  PubMed  Google Scholar 

  15. Yushkevich PA, Piven J, Hazlett HC, Smith RG, Ho S, Gee JC et al (2006) User-guided 3D active contour segmentation of anatomical structures: significantly improved efficiency and reliability. NeuroImage 31(3):1116–1128. https://doi.org/10.1016/j.neuroimage.2006.01.015

    Article  PubMed  Google Scholar 

Download references

Acknowledgments

The authors would like to extend sincerest thanks to the Body Bequeathal Program, Department of Anatomy and Cell Biology as well as Haase Education in Anatomy & Research Technologies (HEART) laboratory at Western University, London, Canada. Additionally, the authors would like to extend thanks to Dr. Jonathan Lau for his help in preparing the anatomical samples, Dr. Corey Baron and Adam Rankin for their aid in the equipment and sequence development used for MR imaging, Dr. Julio Martinez-Trujillo, Dr. Wataru Inoue, Sara Pac, Daniel Cao, Michelle Everest, Shawn Lee, and Jackson Blonde for their contributions to the immunohistochemistry protocol. The authors would also like to thank Dr. Alex Li at the Centre for Functional and Metabolic Mapping for his input on the MRI sequences.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Emma G. Duerden .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2022 The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature

About this protocol

Check for updates. Verify currency and authenticity via CrossMark

Cite this protocol

Seguin, D., Khan, A.R., Duerden, E.G. (2022). Three-Dimensional Atlas of the Human Amygdala Subnuclei Constructed Using Immunohistochemical and Ultrahigh-Field Magnetic Resonance Imaging Data. In: Jahani-Asl, A. (eds) Neuronal Cell Death. Methods in Molecular Biology, vol 2515. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-2409-8_14

Download citation

  • DOI: https://doi.org/10.1007/978-1-0716-2409-8_14

  • Published:

  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-2408-1

  • Online ISBN: 978-1-0716-2409-8

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics