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Post-transcriptional Gene Silencing Using Virus-Induced Gene Silencing to Study Plant Gametogenesis in Tomato

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Plant Gametogenesis

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2484))

Abstract

Loss-of-function analyses are essential to dissect the complex nature of biological processes, including gametogenesis. Virus-induced gene silencing (VIGS) has been widely used in crop species as an amenable and rapid way to generate gene knockdowns. As a transient assay, VIGS circumvents the generation of stable transgenic lines through laborious and time-consuming tissue culture techniques. VIGS involves inoculating plants during early development with genetically manipulated viral constructs carrying an endogenous gene target sequence. The viral infection triggers the host plant gene silencing machinery to process the viral genomic RNA into small RNAs (sRNAs) including the gene complementary region. The sRNAs with complementary sequences to the endogenous gene mediate posttranscriptional gene silencing of the targeted gene. Here, we provide a simple and reproducible VIGS protocol employing the tobacco rattle virus (TRV) in tomato (Solanum lycopersicum cv. M82). As it is stable at later developmental stages this approach is suitable for many traits in tomato including gametogenesis and it can be adapted to other crop species.

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References

  1. O’Malley RC, Ecker JR (2010) Linking genotype to phenotype using the Arabidopsis unimutant collection. Plant J 61:928–940

    Article  Google Scholar 

  2. Zhu H, Li C, Gao C (2020) Applications of CRISPR–Cas in agriculture and plant biotechnology. Nat Rev Mol Cell Biol 21:661–677

    Article  CAS  Google Scholar 

  3. Ossowski S, Schwab R, Weigel D (2008) Gene silencing in plants using artificial microRNAs and other small RNAs. Plant J 53:674–690

    Article  CAS  Google Scholar 

  4. Small I (2007) RNAi for revealing and engineering plant gene functions. Curr Opin Biotechnol 18:148–153

    Article  CAS  Google Scholar 

  5. Ratcliff F, Martin-Hernandez AM, Baulcombe DC (2001) Tobacco rattle virus as a vector for analysis of gene function by silencing. Plant J 25:237–245

    Article  CAS  Google Scholar 

  6. Dinesh-Kumar SP, Anandalakshmi R, Marathe R et al (2003) Virus-induced gene silencing. Methods Mol Biol 236:287–294

    CAS  PubMed  Google Scholar 

  7. Baulcombe D (2004) RNA silencing in plants. Nature 431:356–363

    Article  CAS  Google Scholar 

  8. Martín-Hernández AM, Baulcombe DC (2008) Tobacco rattle virus 16-Kilodalton protein encodes a suppressor of RNA silencing that allows transient viral entry in meristems. J Virol 82:4064–4071

    Article  Google Scholar 

  9. Calvo-Baltanás V, Wijnen CL, Yang C et al (2020) Meiotic crossover reduction by virus-induced gene silencing enables the efficient generation of chromosome substitution lines and reverse breeding in Arabidopsis thaliana. Plant J 104:1437–1452

    Article  Google Scholar 

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Acknowledgements

We thank the BBSRC grant BB/R022658/1. D. C. B. is the Royal Society Edward Penley Abraham Research Professor.

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Correspondence to Zhengming Wang .

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© 2022 The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature

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Wang, Z., Wang, X.Y., Martinho, C., Baulcombe, D.C. (2022). Post-transcriptional Gene Silencing Using Virus-Induced Gene Silencing to Study Plant Gametogenesis in Tomato . In: Lambing, C. (eds) Plant Gametogenesis. Methods in Molecular Biology, vol 2484. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-2253-7_15

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  • DOI: https://doi.org/10.1007/978-1-0716-2253-7_15

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  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-2252-0

  • Online ISBN: 978-1-0716-2253-7

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