Skip to main content

SARS-CoV-2 Real-Time RT-PCR Assay in Animals

  • Protocol
  • First Online:
Animal Coronaviruses

Part of the book series: Springer Protocols Handbooks ((SPH))

  • 401 Accesses

Abstract

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is an enveloped non-segmented, single-stranded, positive-sense RNA virus. SARS-CoV-2 was originally identified in human patients with coronavirus disease in 2019. Since early 2020, SARS-CoV-2 has caused a global pandemic and resulted in millions of human infections and deaths. Other than humans, SARS-CoV-2 has been detected in at least ten different animal species. These animals are presumed to have been infected with SARS-CoV-2 from infected humans (anthroponosis/reverse zoonosis). Testing for SARS-CoV-2 in animals will improve the understanding of viral evolution, transmission, and natural reservoirs. In this chapter, real-time RT-PCR assays to detect SARS-CoV-2 using primers and probes targeting N and E genes are described.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 129.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 169.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 249.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Cases of SARS-CoV-2 in Animals in the United States (June 9, 2021). https://www.aphis.usda.gov/aphis/dashboards/tableau/sars-dashboard. Accessed July 1, 2021

  2. SARS-CoV-2 infections in animals (March 2, 2021). https://www.avma.org/resources-tools/animal-health-and-welfare/covid-19/sars-cov-2-animals-including-pets. Accessed July 1, 2021

  3. Garigliany M, Van Laere AS, Clercx C, Giet D, Escriou N, Huon C, van der Werf S, Eloit M, Desmecht D (2020) SARS-CoV-2 natural transmission from human to cat, Belgium, March 2020. Emerg Infect Dis 26(12):3069–3071. https://doi.org/10.3201/eid2612.202223

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Bartlett SL, Diel DG, Wang L, Zec S, Laverack M, Martins M, Caserta LC, Killian ML, Terio K, Olmstead C, Delaney MA, Stokol T, Ivancic M, Jenkins-Moore M, Ingerman K, Teegan T, McCann C, Thomas P, McAloose D, Sykes JM, Calle PP (2021) Sars-Cov-2 infection and longitudinal fecal screening in Malayan tigers (Panthera Tigris Jacksoni), Amur tigers (Panthera Tigris Altaica ), and African lions (Panthera Leo Krugeri) at the Bronx zoo, New York, USA. J Zoo Wildl Med 51(4):733–744. https://doi.org/10.1638/2020-0171

    Article  PubMed  Google Scholar 

  5. Sit THC, Brackman CJ, Ip SM, Tam KWS, Law PYT, To EMW, Yu VYT, Sims LD, Tsang DNC, Chu DKW, Perera R, Poon LLM, Peiris M (2020) Infection of dogs with SARS-CoV-2. Nature 586(7831):776–778. https://doi.org/10.1038/s41586-020-2334-5

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  6. Sailleau C, Dumarest M, Vanhomwegen J, Delaplace M, Caro V, Kwasiborski A, Hourdel V, Chevaillier P, Barbarino A, Comtet L, Pourquier P, Klonjkowski B, Manuguerra JC, Zientara S, Le Poder S (2020) First detection and genome sequencing of SARS-CoV-2 in an infected cat in France. Transbound Emerg Dis 67(6):2324–2328. https://doi.org/10.1111/tbed.13659

    Article  CAS  PubMed  Google Scholar 

  7. Wang L, Mitchell PK, Calle PP, Bartlett SL, McAloose D, Killian ML, Yuan F, Fang Y, Goodman LB, Fredrickson R, Elvinger F, Terio K, Franzen K, Stuber T, Diel DG, Torchetti MK (2020) Complete genome sequence of SARS-CoV-2 in a Tiger from a U.S. zoological collection. Microbiol Resour Announc 9(22):e00468-20. https://doi.org/10.1128/MRA.00468-20

    Article  PubMed  PubMed Central  Google Scholar 

  8. McAloose D, Laverack M, Wang L, Killian ML, Caserta LC, Yuan F, Mitchell PK, Queen K, Mauldin MR, Cronk BD, Bartlett SL, Sykes JM, Zec S, Stokol T, Ingerman K, Delaney MA, Fredrickson R, Ivancic M, Jenkins-Moore M, Mozingo K, Franzen K, Bergeson NH, Goodman L, Wang H, Fang Y, Olmstead C, McCann C, Thomas P, Goodrich E, Elvinger F, Smith DC, Tong S, Slavinski S, Calle PP, Terio K, Torchetti MK, Diel DG (2020) From people to Panthera: natural SARS-CoV-2 infection in tigers and lions at the Bronx zoo. mBio 11(5):e02220-20. https://doi.org/10.1128/mBio.02220-20

    Article  PubMed  PubMed Central  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Leyi Wang .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2022 The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature

About this protocol

Check for updates. Verify currency and authenticity via CrossMark

Cite this protocol

Wang, L., Olmstead, C., Terio, K., Fredrickson, R. (2022). SARS-CoV-2 Real-Time RT-PCR Assay in Animals. In: Wang, L. (eds) Animal Coronaviruses. Springer Protocols Handbooks. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-2091-5_11

Download citation

  • DOI: https://doi.org/10.1007/978-1-0716-2091-5_11

  • Published:

  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-2090-8

  • Online ISBN: 978-1-0716-2091-5

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics