Abstract
Humanization of therapeutic antibodies derived from animal immunizations is often required to minimize immunogenicity risks in humans, which can cause potentially harmful and serious side effects and reduce antibody efficacy. Humanization is typically applied to conventional monoclonal antibodies derived in rodents as well as single-domain antibodies isolated from camelids and sharks (VHHs and VNARs). A streamlined protocol is described here for sequence humanization of camelid VHHs, which represent a promising biotherapeutic format with many desirable attributes. From human framework selection and complementarity-determining region grafting strategies to empirical scoring for prioritization of back-mutations, step-by-step instructions, and templates are provided along with bioinformatics resources to assist each step of the humanization process. Alternative approaches, warnings, and caveats are also presented.
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References
DeFrancesco L (2019) Drug pipeline 1Q19. Nat Biotechnol 37:579–580
Kaplon H, Muralidharan M, Schneider Z et al (2020) Antibodies to watch in 2020. MAbs 12:1703531
Lu RM, Hwang YC, Liu IJ et al (2020) Development of therapeutic antibodies for the treatment of diseases. J Biomed Sci 27:1
Kang TH, Jung ST (2020) Reprogramming the constant region of immunoglobulin G subclasses for enhanced therapeutic potency against cancer. Biomolecules 10:382
Kohler G, Milstein C (1975) Continuous cultures of fused cells secreting antibody of predefined specificity. Nature 256:495–497
Little M, Kipriyanov SM, Le Gall F et al (2000) Of mice and men: hybridoma and recombinant antibodies. Immunol Today 21:364–370
Klee GG (2000) Human anti-mouse antibodies. Arch Pathol Lab Med 124:921–923
Gonzales NR, De Pascalis R, Schlom J et al (2005) Minimizing the immunogenicity of antibodies for clinical application. Tumour Biol 26:31–43
Safdari Y, Farajnia S, Asgharzadeh M et al (2013) Antibody humanization methods—a review and update. Biotechnol Genet Eng Rev 29:175–186
Riechmann L, Clark M, Waldmann H et al (1988) Reshaping human antibodies for therapy. Nature 332:323–327
Hwang WYK, Foote J (2005) Immunogenicity of engineered antibodies. Methods 36:3–10
Konning D, Zielonka S, Grzeschik J et al (2016) Camelid and shark single domain antibodies: structural features and therapeutic potential. Curr Opin Struct Biol 45:10–16
Desmyter A, Spinelli S, Roussel A et al (2015) Camelid nanobodies: killing two birds with one stone. Curr Opin Struct Biol 32:1–8
Hussack G, Hirama T, Ding W et al (2011) Engineered single-domain antibodies with high protease resistance and thermal stability. PLoS One 6:e28218
Kijanka M, Dorresteijn B, Oliveira S et al (2015) Nanobody-based cancer therapy of solid tumors. Nanomedicine (Lond) 10:161–174
Van Audenhove I, Gettemans J (2016) Nanobodies as versatile tools to understand, diagnose, visualize and treat cancer. EBioMedicine 8:40–48
Morrison C (2019) Nanobody approval gives domain antibodies a boost. Nat Rev Drug Discov 18:485–487
Arbabi-Ghahroudi M (2017) Camelid single-domain antibodies: historical perspective and future outlook. Front Immunol 8:1589
Vincke C, Loris R, Saerens D et al (2009) General strategy to humanize a camelid single-domain antibody and identification of a universal humanized nanobody scaffold. J Biol Chem 284:3273–3284
Lefranc MP, Giudicelli V, Duroux P et al (2015) IMGT®, the international ImMunoGeneTics information system® 25 years on. Nucleic Acids Res 43(Database issue):D413–D422
Katoh K, Rozewicki J, Yamada KD (2019) MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Brief Bioinform 20:1160–1166
Leem J, Dunbar J, Georges G et al (2016) ABodyBuilder: Sutomated antibody structure prediction with data-driven accuracy estimation. MAbs 8:1259–1268
Wu TT, Kabat EA (1970) An analysis of the sequences of the variable regions of Bence Jones proteins and myeloma light chains and their implications for antibody complementarity. J Exp Med 132:211–250
Kabat EA, Wu TT (1991) Identical V region amino acid sequences and segments of sequences in antibodies of different specificities. Relative contributions of VH and VL genes, minigenes, and complementarity-determining regions to binding of antibody-combining sites. J Immunol 147:1709–1719
Chothia C, Lesk AM (1987) Canonical structures for the hypervariable regions of immunoglobulins. J Mol Biol 196:901–917
Al-Lazikani B, Lesk AM, Chothia C (1997) Standard conformations for the canonical structures of immunoglobulins. J Mol Biol 273:927–948
Lefranc MP, Pommie C, Ruiz M et al (2003) IMGT unique numbering for immunoglobulin and T cell receptor variable domains and Ig superfamily V-like domains. Dev Comp Immunol 27:55–77
Deret S, Maissiat C, Aucouturier P et al (1995) SUBIM: a program for analysing the Kabat database and determining the variability subgroup of a new immunoglobulin sequence. Comput Appl Biosci 11:435–439
Brochet X, Lefranc MP, Giudicelli V (2008) IMGT/V-QUEST: the highly customized and integrated system for IG and TR standardized V-J and V-D-J sequence analysis. Nucleic Acids Res 36(Web Server issue):W503–W508
Giudicelli V, Brochet X, Lefranc MP (2011) IMGT/V-QUEST: IMGT standardized analysis of the immunoglobulin (IG) and T cell receptor (TR) nucleotide sequences. Cold Spring Harb Protoc 6:695–715
Knappik A, Ge L, Honegger A et al (2000) Fully synthetic human combinatorial antibody libraries (HuCAL) based on modular consensus frameworks and CDRs randomized with trinucleotides. J Mol Biol 296:57–86
Abhinandan KR, Martin AC (2008) Analysis and improvements to Kabat and structurally correct numbering of antibody variable domains. Mol Immunol 45:3832–3839
Retter I, Althaus HH, Munch R et al (2005) VBASE2, an integrative V gene database. Nucleic Acids Res 33(Database issue):D671–D674
Dhanda SK, Grifoni A, Pham J et al (2018) Development of a strategy and computational application to select candidate protein analogues with reduced HLA binding and immunogenicity. Immunology 153:118–132
Pires DE, Ascher DB, Blundell TL (2014) mCSM: predicting the effects of mutations in proteins using graph-based signatures. Bioinformatics 30:335–342
van Faassen H, Ryan S, Henry KA et al (2020) Serum albumin-binding VHHs with variable pH sensitivities enable tailored half-life extension of biologics. FASEB J 34:8155–8171
Foote J, Winter G (1992) Antibody framework residues affecting the conformation of the hypervariable loops. J Mol Biol 224:487–499
Conrath K, Vincke C, Stijlemans B et al (2005) Antigen binding and solubility effects upon the veneering of a camel VHH in framework-2 to mimic a VH. J Mol Biol 350:112–125
Bond CJ, Wiesmann C, Marsters JC et al (2005) A structure-based database of antibody variable domain diversity. J Mol Biol 348:699–709
Sircar A, Sanni KA, Shi J et al (2011) Analysis and modeling of the variable region of camelid single-domain antibodies. J Immunol 186:6357–6367
Makabe K, Nakanishi T, Tsumoto K et al (2008) Thermodynamic consequences of mutations in vernier zone residues of a humanized anti-human epidermal growth factor receptor murine antibody, 528. J Biol Chem 283:1156–1166
Deschacht N, De Groeve K, Vincke C et al (2010) A novel promiscuous class of camelid single-domain antibody contributes to the antigen-binding repertoire. J Immunol 184:5696–5704
Kashmiri SV, De Pascalis R, Gonzales NR et al (2005) SDR grafting—a new approach to antibody humanization. Methods 36:25–34
Padlan EA (1991) A possible procedure for reducing the immunogenicity of antibody variable domains while preserving their ligand-binding properties. Mol Immunol 28:489–498
Henry KA, Sulea T, van Faassen H et al (2016) A rational engineering strategy for designing protein A-binding camelid single-domain antibodies. PLoS One 11:e0163113
Graille M, Stura EA, Corper AL et al (2000) Crystal structure of a Staphylococcus aureus protein A domain complexed with the Fab fragment of a human IgM antibody: structural basis for recognition of B-cell receptors and superantigen activity. Proc Natl Acad Sci U S A 97:5399–5404
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Sulea, T. (2022). Humanization of Camelid Single-Domain Antibodies. In: Hussack, G., Henry, K.A. (eds) Single-Domain Antibodies. Methods in Molecular Biology, vol 2446. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-2075-5_14
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DOI: https://doi.org/10.1007/978-1-0716-2075-5_14
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