Abstract
One-carbon metabolism (1CM) plays a central role in liver physiology, being the source of essential metabolites such as S-adenosylmethionine, the main alkylating agent in living cells, and glutathione, their most important nonenzymatic antioxidant defense. Impairment of 1CM in hepatocytes is a recognized factor associated to chronic liver disorders and hepatocellular carcinoma. With this in mind, we have proposed the concept of functional biomarker referring to a cellular pathway that can be systematically monitored as indicative of a particular physiological or pathological condition. Here we describe a targeted mass spectrometry (MRM) protocol to simultaneously quantify 13 1CM enzymes in liver tissue specimens.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Hanash SM, Pitteri SJ, Faca VM (2008) Mining the plasma proteome for cancer biomarkers. Nature 452(7187):571–579. https://doi.org/10.1038/nature06916
Ludwig JA, Weinstein JN (2005) Biomarkers in cancer staging, prognosis and treatment selection. Nat Rev Cancer 5(11):845–856. https://doi.org/10.1038/nrc1739
Asrani SK, Devarbhavi H, Eaton J, Kamath PS (2019) Burden of liver diseases in the world. J Hepatol 70(1):151–171. https://doi.org/10.1016/j.jhep.2018.09.014
Ryerson AB, Eheman CR, Altekruse SF et al (2016) Annual report to the nation on the status of cancer, 1975-2012, featuring the increasing incidence of liver cancer. Cancer 122(9):1312–1337. https://doi.org/10.1002/cncr.29936
Singal AG, Lampertico P, Nahon P (2020) Epidemiology and surveillance for hepatocellular carcinoma: new trends. J Hepatol 72(2):250–261. https://doi.org/10.1016/j.jhep.2019.08.025
Chuang SC, La Vecchia C, Boffetta P (2009) Liver cancer: descriptive epidemiology and risk factors other than HBV and HCV infection. Cancer Lett 286(1):9–14. https://doi.org/10.1016/j.canlet.2008.10.040
Rastogi A (2018) Changing role of histopathology in the diagnosis and management of hepatocellular carcinoma. World J Gastroenterol 24(35):4000–4013. https://doi.org/10.3748/wjg.v24.i35.4000
Caldez MJ, Van Hul N, Koh HWL et al (2018) Metabolic remodeling during liver regeneration. Dev Cell 47(4):425–438. https://doi.org/10.1016/j.devcel.2018.09.020
Locasale JW (2013) Serine, glycine and one-carbon units: cancer metabolism in full circle. Nat Rev Cancer 13(8):572–583. https://doi.org/10.1038/nrc3557
Lu SC, Mato JM (2008) S-Adenosylmethionine in cell growth, apoptosis and liver cancer. J Gastroenterol Hepatol 23:73–77. https://doi.org/10.1111/j.1440-1746.2007.05289.x
Mora MI, Molina M, Odriozola L et al (2017) Prioritizing popular proteins in liver cancer: Remodelling one-carbon metabolism. J Proteome Res 16(12):4506–4514. https://doi.org/10.1021/acs.jproteome.7b00390
(2013) Method of the year 2012. Nature Methods 10(1):1. https://doi.org/10.1038/nmeth.2329
Carr SA, Abbatiello SE, Ackermann BL et al (2014) Targeted peptide measurements in biology and medicine: best practices for mass spectrometry-based assay development using a fit-for-purpose approach. Mol Cell Proteomics 13(3):907–917. https://doi.org/10.1074/mcp.M113.036095
MacLean B, Tomazela DM, Schulman N et al (2010) Skyline: an open source document editor for creating and analyzing targeted proteomics experiments. Bioinformatics 26(7):966–968. https://doi.org/10.1093/bioinformatics/btq054
Acknowledgments
This work was supported by the Carlos III Health Institute of Spain—Fondos FEDER (EU); grant PT17/0019/0001 (FJC); Comunidad de Madrid Grant B2017/BMD-3817 (FJC); CSIC PIE Grant 202020E108. CNB-CSIC has been designed Centre of Excellence “Severo Ochoa” and is funded by the Spanish Government through grant SEV2017-0712.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2022 The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature
About this protocol
Cite this protocol
Guerrero, L., Paradela, A., Corrales, F.J. (2022). Development of a Standardized MRM Method for the Quantification of One Carbon Metabolism Enzymes. In: Corrales, F.J., Paradela, A., Marcilla, M. (eds) Clinical Proteomics. Methods in Molecular Biology, vol 2420. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-1936-0_13
Download citation
DOI: https://doi.org/10.1007/978-1-0716-1936-0_13
Published:
Publisher Name: Humana, New York, NY
Print ISBN: 978-1-0716-1935-3
Online ISBN: 978-1-0716-1936-0
eBook Packages: Springer Protocols