Skip to main content

Molecular Cloning and Purification of the Protein Lysine Methyltransferase SMYD2 and its Co-crystallization with a Target Peptide from Estrogen Receptor Alpha

  • Protocol
  • First Online:
Estrogen Receptors

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2418))

Abstract

Methylation of estrogen receptor α by the protein lysine methyltransferase SMYD2 regulates ERα chromatin recruitment and its target gene expression. This protocol describes SMYD2 molecular cloning and purification and crystallization of SMYD2 in complex with an ERα peptide. Recombinant SMYD2 is constructed and overexpressed in Escherichia coli cells. After release from the cells by French Press, SMYD2 is purified to apparent homogeneity with multiple chromatography methods. Nickel affinity column purifies SMYD2 based on specific interaction of its 6xHis tag with the bead-immobilized nickel ions. Desalting column is used for protein buffer exchange. Gel filtration column purifies SMYD2 based on molecular size. The entire purification process is monitored and analyzed by SDS-polyacrylamide gel electrophoresis. Crystallization of SMYD2 is performed with the hanging-drop vapor diffusion method. Crystals of the SMYD2–ERα peptide complex are obtained by microseeding using Seeding Bead. This method can give rise to large size of crystals which are suitable for X-ray diffraction data collection. X-ray crystallographic study of the SMYD2–ERα complex can provide structural insight into posttranslational regulation of ERα signaling.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 129.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 169.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 249.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Tsai MJ, O'Malley BW (1994) Molecular mechanisms of action of steroid/thyroid receptor superfamily members. Annu Rev Biochem 63:451–486. https://doi.org/10.1146/annurev.bi.63.070194.002315

    Article  CAS  PubMed  Google Scholar 

  2. Zhang X, Huang Y, Shi X (2015) Emerging roles of lysine methylation on non-histone proteins. Cell Mol Life Sci 72(22):4257–4272. https://doi.org/10.1007/s00018-015-2001-4

    Article  CAS  PubMed  Google Scholar 

  3. Kim MY, Woo EM, Chong YT, Homenko DR, Kraus WL (2006) Acetylation of estrogen receptor alpha by p300 at lysines 266 and 268 enhances the deoxyribonucleic acid binding and transactivation activities of the receptor. Mol Endocrinol 20(7):1479–1493. https://doi.org/10.1210/me.2005-0531

    Article  CAS  PubMed  Google Scholar 

  4. Wang C, Fu M, Angeletti RH, Siconolfi-Baez L, Reutens AT, Albanese C, Lisanti MP, Katzenellenbogen BS, Kato S, Hopp T, Fuqua SA, Lopez GN, Kushner PJ, Pestell RG (2001) Direct acetylation of the estrogen receptor alpha hinge region by p300 regulates transactivation and hormone sensitivity. J Biol Chem 276(21):18375–18383. https://doi.org/10.1074/jbc.M100800200

    Article  CAS  PubMed  Google Scholar 

  5. Subramanian K, Jia D, Kapoor-Vazirani P, Powell DR, Collins RE, Sharma D, Peng J, Cheng X, Vertino PM (2008) Regulation of estrogen receptor alpha by the SET7 lysine methyltransferase. Mol Cell 30(3):336–347. https://doi.org/10.1016/j.molcel.2008.03.022

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  6. Zhang X, Tanaka K, Yan J, Li J, Peng D, Jiang Y, Yang Z, Barton MC, Wen H, Shi X (2013) Regulation of estrogen receptor alpha by histone methyltransferase SMYD2-mediated protein methylation. Proc Natl Acad Sci U S A 110(43):17284–17289. https://doi.org/10.1073/pnas.1307959110

    Article  PubMed  PubMed Central  Google Scholar 

  7. Jiang Y, Trescott L, Holcomb J, Zhang X, Brunzelle J, Sirinupong N, Shi X, Yang Z (2014) Structural insights into estrogen receptor alpha methylation by histone methyltransferase SMYD2, a cellular event implicated in estrogen signaling regulation. J Mol Biol 426(20):3413–3425

    Article  CAS  Google Scholar 

  8. Bergfors T (2003) Seeds to crystals. J Struct Biol 142(1):66–76

    Article  CAS  Google Scholar 

  9. Sirinupong N, Brunzelle J, Ye J, Pirzada A, Nico L, Yang Z (2010) Crystal structure of cardiac-specific histone methyltransferase SmyD1 reveals unusual active site architecture. J Biol Chem 285(52):40635–40644. https://doi.org/10.1074/jbc.M110.168187

    Article  PubMed  PubMed Central  Google Scholar 

  10. Sirinupong N, Brunzelle J, Doko E, Yang Z (2011) Structural insights into the autoinhibition and posttranslational activation of histone methyltransferase SmyD3. J Mol Biol 406(1):149–159. https://doi.org/10.1016/j.jmb.2010.12.014

    Article  CAS  PubMed  Google Scholar 

  11. Jiang Y, Sirinupong N, Brunzelle J, Yang Z (2011) Crystal structures of histone and p53 methyltransferase SmyD2 reveal a conformational flexibility of the autoinhibitory C-terminal domain. PLoS One 6(6):e21640. https://doi.org/10.1371/journal.pone.0021640

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  12. Papanyan Z, Markarian S (2013) Detection of oxidation of L-cysteine by dimethyl sulfoxide in aqueous solutions by IR spectroscopy. J Appl Spectrosc 80(5):775–778. https://doi.org/10.1007/s10812-013-9841-1

    Article  CAS  Google Scholar 

  13. Rand K (1996) Crystal violet can be used to visualize DNA bands during gel electrophoresis and to improve cloning efficiency. Technical Tips Online 1:23–24

    Article  Google Scholar 

  14. San-Miguel T, Perez-Bermudez P, Gavidia I (2013) Production of soluble eukaryotic recombinant proteins in E. coli is favoured in early log-phase cultures induced at low temperature. SpringerPlus 2(1):89. https://doi.org/10.1186/2193-1801-2-89

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  15. Benvenuti M, Mangani S (2007) Crystallization of soluble proteins in vapor diffusion for X-ray crystallography. Nat Protoc 2(7):1633–1651. https://doi.org/10.1038/nprot.2007.198

    Article  CAS  PubMed  Google Scholar 

  16. Jiang Y, Holcomb J, Spellmon N, Yang Z (2016) Purification of histone lysine methyltransferase SMYD2 and co-crystallization with a target peptide from estrogen receptor α. Methods Mol Biol 1366:207–217. https://doi.org/10.1007/978-1-4939-3127-9_16

    Article  CAS  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Zhe Yang .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2022 The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature

About this protocol

Check for updates. Verify currency and authenticity via CrossMark

Cite this protocol

Zhang, Y., Yang, Z. (2022). Molecular Cloning and Purification of the Protein Lysine Methyltransferase SMYD2 and its Co-crystallization with a Target Peptide from Estrogen Receptor Alpha. In: Eyster, K.M. (eds) Estrogen Receptors. Methods in Molecular Biology, vol 2418. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-1920-9_19

Download citation

  • DOI: https://doi.org/10.1007/978-1-0716-1920-9_19

  • Published:

  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-1919-3

  • Online ISBN: 978-1-0716-1920-9

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics